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Philip Lijnzaad
Philip Lijnzaad
bioinformatician, Princess Maxima Center for Pediatric Oncology
Verified email at prinsesmaximacentrum.nl
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Cited by
Year
The Ensembl genome database project
T Hubbard, D Barker, E Birney, G Cameron, Y Chen, L Clark, T Cox, J Cuff, ...
Nucleic acids research 30 (1), 38-41, 2002
18502002
The double cubic lattice method: Efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies
F Eisenhaber, P Lijnzaad, P Argos, C Sander, M Scharf
Journal of computational chemistry 16 (3), 273-284, 1995
8681995
A physical map of 30,000 human genes
P Deloukas, GD Schuler, G Gyapay, EM Beasley, C Soderlund, ...
Science 282 (5389), 744-746, 1998
8311998
An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas
P Roepman, LFA Wessels, N Kettelarij, P Kemmeren, AJ Miles, ...
Nature genetics 37 (2), 182-186, 2005
5032005
Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors
P Kemmeren, K Sameith, LAL Van De Pasch, JJ Benschop, TL Lenstra, ...
Cell 157 (3), 740-752, 2014
2752014
Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit
M Radonjic, JC Andrau, P Lijnzaad, P Kemmeren, TTJP Kockelkorn, ...
Molecular cell 18 (2), 171-183, 2005
2502005
The specificity and topology of chromatin interaction pathways in yeast
TL Lenstra, JJ Benschop, TS Kim, JM Schulze, NACH Brabers, ...
Molecular cell 42 (4), 536-549, 2011
2422011
Genome-wide location of the coactivator mediator: Binding without activation and transient Cdk8 interaction on DNA
JC Andrau, L van de Pasch, P Lijnzaad, T Bijma, MG Koerkamp, ...
Molecular cell 22 (2), 179-192, 2006
1862006
An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity
C Calandrini, F Schutgens, R Oka, T Margaritis, T Candelli, L Mathijsen, ...
Nature communications 11 (1), 1310, 2020
1532020
Functional overlap and regulatory links shape genetic interactions between signaling pathways
S van Wageningen, P Kemmeren, P Lijnzaad, T Margaritis, JJ Benschop, ...
Cell 143 (6), 991-1004, 2010
1412010
Hydrophobic patches on protein subunit interfaces: characteristics and prediction
P Lijnzaad, P Argos
Proteins: Structure, Function, and Bioinformatics 28 (3), 333-343, 1997
1391997
CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing
JK De Kanter, P Lijnzaad, T Candelli, T Margaritis, FCP Holstege
Nucleic acids research 47 (16), e95-e95, 2019
1372019
Cell cycle population effects in perturbation studies
E O'Duibhir, P Lijnzaad, JJ Benschop, TL Lenstra, D van Leenen, ...
Molecular systems biology 10 (6), 732, 2014
1002014
A consensus of core protein complex compositions for Saccharomyces cerevisiae
JJ Benschop, N Brabers, D van Leenen, LV Bakker, HWM van Deutekom, ...
Molecular cell 38 (6), 916-928, 2010
872010
Gcn4 misregulation reveals a direct role for the evolutionary conserved EKC/KEOPS in the t6A modification of tRNAs
MC Daugeron, TL Lenstra, M Frizzarin, B El Yacoubi, X Liu, ...
Nucleic acids research 39 (14), 6148-6160, 2011
812011
Hydrophobic patches on the surfaces of protein structures
P Lijnzaad, HJC Berendsen, P Argos
Proteins: Structure, Function, and Bioinformatics 25 (3), 389-397, 1996
771996
A method for detecting hydrophobic patches on protein surfaces
P Lijnzaad, HJC Berendsen, P Argos
Proteins: Structure, Function, and Bioinformatics 26 (2), 192-203, 1996
671996
Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell
G Kildisiute, WM Kholosy, MD Young, K Roberts, R Elmentaite, ...
Science advances 7 (6), eabd3311, 2021
582021
Tertiary structure of two‐electron reduced Megasphaera elsdenii flavodoxin and some implications, as determined by two‐dimensional 1H‐NMR and restrained …
CPM van MIERLO, P LIJNZAAD, J VERVOORT, F MÜLLER, ...
European journal of biochemistry 194 (1), 185-198, 1990
561990
Adaptable gene‐specific dye bias correction for two‐channel DNA microarrays
T Margaritis, P Lijnzaad, D Van Leenen, D Bouwmeester, P Kemmeren, ...
Molecular Systems Biology 5 (1), 266, 2009
512009
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