Markus Herrgard
Markus Herrgard
CTO, BioInnovation Institute
Verified email at - Homepage
Cited by
Cited by
Reconstruction of biochemical networks in microorganisms
AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson
Nature Reviews Microbiology 7 (2), 129-143, 2009
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard
Nature protocols 2 (3), 727-738, 2007
Integrating high-throughput and computational data elucidates bacterial networks
MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson
Nature 429 (6987), 92-96, 2004
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
NC Duarte, MJ Herrgård, BØ Palsson
Genome research 14 (7), 1298-1309, 2004
Network-based prediction of human tissue-specific metabolism
T Shlomi, MN Cabili, MJ Herrgård, BØ Palsson, E Ruppin
Nature biotechnology 26 (9), 1003-1010, 2008
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ...
Nature biotechnology 26 (10), 1155-1160, 2008
Connecting extracellular metabolomic measurements to intracellular flux states in yeast
ML Mo, BØ Palsson, MJ Herrgård
BMC systems biology 3, 1-17, 2009
Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae
T Jakočiūnas, I Bonde, M Herrgård, SJ Harrison, M Kristensen, ...
Metabolic engineering 28, 213-222, 2015
Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism
D Machado, M Herrgård
PLoS computational biology 10 (4), e1003580, 2014
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli
AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ...
Metabolic engineering 12 (3), 173-186, 2010
Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae
MJ Herrgård, BS Lee, V Portnoy, BØ Palsson
Genome research 16 (5), 627-635, 2006
Building a global alliance of biofoundries
N Hillson, M Caddick, Y Cai, JA Carrasco, MW Chang, NC Curach, ...
Nature communications 10 (1), 2040, 2019
Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function
WP Inskeep, DB Rusch, ZJ Jay, MJ Herrgard, MA Kozubal, ...
PloS one 5 (3), e9773, 2010
Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via β-alanine
I Borodina, KR Kildegaard, NB Jensen, TH Blicher, J Maury, S Sherstyk, ...
Metabolic engineering 27, 57-64, 2015
Reconstruction of microbial transcriptional regulatory networks
MJ Herrgård, MW Covert, BØ Palsson
Current opinion in biotechnology 15 (1), 70-77, 2004
The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem
WP Inskeep, ZJ Jay, SG Tringe, MJ Herrgård, DB Rusch, ...
Frontiers in microbiology 4, 67, 2013
Methods and systems to identify operational reaction pathways
BO Palsson, MW Covert, M Herrgard
US Patent 7,734,420, 2010
Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations
TE Sandberg, M Pedersen, RA LaCroix, A Ebrahim, M Bonde, ...
Molecular biology and evolution 31 (10), 2647-2662, 2014
Reconciling gene expression data with known genome-scale regulatory network structures
MJ Herrgård, MW Covert
Genome research 13 (11), 2423-2434, 2003
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