Markus Herrgard

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Bernhard PalssonUCSDVerified email at eng.ucsd.edu
Adam FeistUCSD / DTUVerified email at ucsd.edu
Nikolaus SonnenscheinGinkgo BioworksVerified email at ginkgobioworks.com
Rebecca M LennenSenior Researcher, Novo Nordisk Foundation Center for Biosustainability, Technical University ofVerified email at biosustain.dtu.dk
Markus CovertStanford UniversityVerified email at stanford.edu
Daniel MachadoNorwegian University of Science and TechnologyVerified email at ntnu.no
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se
Irina BorodinaThe Novo Nordisk Foundation Center for Biosustainability, Technical University of DenmarkVerified email at biosustain.dtu.dk
Morten O A SommerProfessor, Technical University of DenmarkVerified email at bio.dtu.dk
Konstantin SchneiderBASF SEVerified email at basf.com
William P. InskeepProfessor, Montana State UniversityVerified email at montana.edu
Douglas B RuschIndiana University BloomingtonVerified email at indiana.edu
Zackary J JayMontana State UniversityVerified email at montana.edu
Scott J HarrisonAffinity Biomarker LabsVerified email at affinitybiomarkerlabs.com
Lasse Ebdrup PedersenThe Technical University of DenmarkVerified email at dtu.dk
Susannah TringeEnvironmental Genomics and Systems Biology, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Christian LievenNovo Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Jay KeaslingProfessor of Chemical & Biomolecular Engineering and of Bioengineering, University of CaliforniaVerified email at lbl.gov
Michael Krogh JensenGroup leader, Novo-Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Eytan RuppinChief, Cancer Data Science Lab (CDSL), NCI/NIHVerified email at nih.gov

Markus Herrgard

CTO, BioInnovation Institute

Verified email at bii.dk - Homepage

Life Science Innovation Synthetic Biology Metabolic Engineering Systems Biology


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Reconstruction of biochemical networks in microorganisms AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson Nature Reviews Microbiology 7 (2), 129-143, 2009	1053	2009
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard Nature protocols 2 (3), 727-738, 2007	1000	2007
Integrating high-throughput and computational data elucidates bacterial networks MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson Nature 429 (6987), 92-96, 2004	996	2004
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model NC Duarte, MJ Herrgård, BØ Palsson Genome research 14 (7), 1298-1309, 2004	821	2004
Network-based prediction of human tissue-specific metabolism T Shlomi, MN Cabili, MJ Herrgård, BØ Palsson, E Ruppin Nature biotechnology 26 (9), 1003-1010, 2008	716	2008
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008	661	2008
Connecting extracellular metabolomic measurements to intracellular flux states in yeast ML Mo, BØ Palsson, MJ Herrgård BMC systems biology 3 (1), 1-17, 2009	516	2009
Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae T Jakočiūnas, I Bonde, M Herrgård, SJ Harrison, M Kristensen, ... Metabolic engineering 28, 213-222, 2015	415	2015
Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism D Machado, M Herrgård PLoS computational biology 10 (4), e1003580, 2014	394	2014
Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae MJ Herrgård, BS Lee, V Portnoy, BØ Palsson Genome research 16 (5), 627-635, 2006	281	2006
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ... Metabolic engineering 12 (3), 173-186, 2010	273	2010
MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020	238	2020
Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function WP Inskeep, DB Rusch, ZJ Jay, MJ Herrgard, MA Kozubal, ... PloS one 5 (3), e9773, 2010	212	2010
Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via β-alanine I Borodina, KR Kildegaard, NB Jensen, TH Blicher, J Maury, S Sherstyk, ... Metabolic engineering 27, 57-64, 2015	204	2015
Reconstruction of microbial transcriptional regulatory networks MJ Herrgård, MW Covert, BØ Palsson Current opinion in biotechnology 15 (1), 70-77, 2004	197	2004
Building a global alliance of biofoundries N Hillson, M Caddick, Y Cai, JA Carrasco, MW Chang, NC Curach, ... Nature communications 10 (1), 2040, 2019	194	2019
Methods and systems to identify operational reaction pathways BO Palsson, MW Covert, M Herrgard US Patent 7,734,420, 2010	173	2010
The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem WP Inskeep, ZJ Jay, SG Tringe, MJ Herrgård, DB Rusch, ... Frontiers in microbiology 4, 67, 2013	166	2013
Reconciling gene expression data with known genome-scale regulatory network structures MJ Herrgård, MW Covert Genome research 13 (11), 2423-2434, 2003	161	2003
Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations TE Sandberg, M Pedersen, RA LaCroix, A Ebrahim, M Bonde, ... Molecular biology and evolution 31 (10), 2647-2662, 2014	158	2014

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