| Hepatitis B virus stimulates G6PD expression through HBx-mediated Nrf2 activation B Liu, M Fang, Z He, D Cui, S Jia, X Lin, X Xu, T Zhou, W Liu Cell death & disease 6 (11), e1980-e1980, 2015 | 114 | 2015 |
| Hydrogel-based colorectal cancer organoid co-culture models X Luo, ELS Fong, C Zhu, QXX Lin, M Xiong, A Li, T Li, T Benoukraf, H Yu, ... Acta biomaterialia 132, 461-472, 2021 | 99 | 2021 |
| Generation of matched patient-derived xenograft in vitro-in vivo models using 3D macroporous hydrogels for the study of liver cancer ELS Fong, TB Toh, QXX Lin, Z Liu, L Hooi, MBMA Rashid, T Benoukraf, ... Biomaterials 159, 229-240, 2018 | 69 | 2018 |
| MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles QX Xuan Lin, S Sian, O An, D Thieffry, S Jha, T Benoukraf Nucleic acids research 47 (D1), D145-D154, 2019 | 63 | 2019 |
| Sphingosine-1-phosphate signaling modulates terminal erythroid differentiation through the regulation of mitophagy C Yang, M Hashimoto, QXX Lin, DQ Tan, T Suda Experimental hematology 72, 47-59. e1, 2019 | 37 | 2019 |
| Targeted inhibition of purine metabolism is effective in suppressing hepatocellular carcinoma progression YC Chong, TB Toh, Z Chan, QXX Lin, DKH Thng, L Hooi, Z Ding, T Shuen, ... Hepatology communications 4 (9), 1362-1381, 2020 | 26 | 2020 |
| TFregulomeR reveals transcription factors’ context-specific features and functions QXX Lin, D Thieffry, S Jha, T Benoukraf Nucleic acids research 48 (2), e10-e10, 2020 | 24 | 2020 |
| Human Nasal Epithelial Cells Sustain Persistent SARS-CoV-2 Infection In Vitro, despite Eliciting a Prolonged Antiviral Response AM Gamage, KS Tan, WOY Chan, ZZR Lew, J Liu, CW Tan, ... Mbio 13 (1), e03436-21, 2022 | 14 | 2022 |
| LncRNA SFTA1P mediates positive feedback regulation of the Hippo-YAP/TAZ signaling pathway in non-small cell lung cancer B Zhu, M Finch-Edmondson, KW Leong, X Zhang, M V, QXX Lin, Y Lee, ... Cell Death Discovery 7 (1), 369, 2021 | 14 | 2021 |
| RCA2: a scalable supervised clustering algorithm that reduces batch effects in scRNA-seq data F Schmidt, B Ranjan, QXX Lin, V Krishnan, I Joanito, MA Honardoost, ... Nucleic Acids Research 49 (15), 8505-8519, 2021 | 9 | 2021 |
| Targeted intragenic demethylation initiates chromatin rewiring for gene activation YV Liu, MA Bassal, MK Jayasinghe, QXX Lin, CS Wu, JP Tang, J Kwon, ... BioRxiv, 2020.07. 16.205922, 2020 | 8 | 2020 |
| miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set LH Abdul Hadi, QX Xuan Lin, TT Minh, M Loh, HK Ng, A Salim, R Soong, ... BMC bioinformatics 19, 1-8, 2018 | 4 | 2018 |
| ZBTB33 (Kaiso) methylated binding sites are associated with primed heterochromatin QXX Lin, K Rebbani, S Jha, T Benoukraf BioRxiv, 585653, 2019 | 3 | 2019 |
| Datasets describing the growth and molecular features of hepatocellular carcinoma patient-derived xenograft cells grown in a three-dimensional macroporous hydrogel ELS Fong, TB Toh, QXX Lin, Z Liu, L Hooi, MBMA Rashid, T Benoukraf, ... Data in brief 18, 594-606, 2018 | 3 | 2018 |
| Longitudinal single cell atlas identifies complex temporal relationship between type I interferon response and COVID-19 severity QXX Lin, D Rajagopalan, AM Gamage, LM Tan, PN Venkatesh, ... Nature Communications 15 (1), 567, 2024 | 2 | 2024 |
| MethMotif. Org 2024: a database integrating context-specific transcription factor-binding motifs with DNA methylation patterns M Dyer, QXX Lin, S Shapoval, D Thieffry, T Benoukraf Nucleic Acids Research 52 (D1), D222-D228, 2024 | 1 | 2024 |
| Robust clustering and interpretation of scRNA-seq data using reference component analysis F Schmidt, B Ranjan, QXX Lin, V Krishnan, I Joanito, MA Honardoost, ... bioRxiv, 2021.02. 16.431527, 2021 | 1 | 2021 |
| Systematic immune cell dysregulation and molecular subtypes revealed by single-cell RNA-seq of subjects with type 1 diabetes MA Honardoost, A Adinatha, F Schmidt, B Ranjan, M Ghaeidamini, ... Genome Medicine 16 (1), 45, 2024 | | 2024 |
| Quantification of the escape from X chromosome inactivation with the million cell-scale human single-cell omics datasets reveals heterogeneity of escape across cell types and … Y Tomofuji, R Edahiro, Y Shirai, KH Kock, K Sonehara, QS Wang, ... bioRxiv, 2023.10. 14.561800, 2023 | | 2023 |
| MethMotif. org 2023: The transcription factor binding motifs database that integrates cell-specific functions, co-factors and DNA methylation profiles. M Dyer, QXX Lin, S Shapoval, D Thieffry, T Benoukraf | | 2022 |
Touati BenoukrafAssociate Professor, Memorial University of Newfoundland | Faculty of MedicineVerified email at mun.ca
