Salvatore Cosentino

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Ole LundTechnical University of DenmarkVerificeret mail på dtu.dk
Frank AarestrupTechnical University of Denmark, DTUVerificeret mail på food.dtu.dk
Mette Voldby LarsenVerificeret mail på goseqit.com
Henrik HasmanStatens Serum InstitutVerificeret mail på hasman.dk
Simon RasmussenProfessor, University of CopenhagenVerificeret mail på sund.ku.dk
Ea ZankariVerificeret mail på cbs.dtu.dk
Thomas Sicheritz-PontenProfessor in Computational Phage Biodiscovery, University of CopenhagenVerificeret mail på sund.ku.dk
Dave UsseryProfessor, Department of BioMedical Informatics, UAMSVerificeret mail på uams.edu
Wataru IwasakiProfessor, Department of Integrated Biosciences, the University of TokyoVerificeret mail på k.u-tokyo.ac.jp
Lars JelsbakProfessor at the Technical University of Denmark (DTU Bioengineering)Verificeret mail på bio.dtu.dk
Dhany SaputraPhD student, Center for Biological Sequence Analysis, Technical University of DenmarkVerificeret mail på cbs.dtu.dk
Oksana LukjancenkoClinical Microbiomics A/SVerificeret mail på clinical-microbiomics.com
Christophe DessimozProfessor at UNIL and Director of SIB Swiss Institute of BioinformaticsVerificeret mail på unil.ch
Erik SonnhammerProfessor of Bioinformatics, DBB Stockholm University, Science for Life LaboratoryVerificeret mail på scilifelab.se
Natasha GloverSwiss Institute of Bioinformatics, University of LausanneVerificeret mail på unil.ch
Odile LecompteProfessor of Bioinformatics and Genomics, University of Strasbourg, ICUBEVerificeret mail på unistra.fr
Yannis NeversUniversity of LausanneVerificeret mail på unil.ch
Paul D ThomasProfessor, University of Southern CaliforniaVerificeret mail på usc.edu
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA-CSIC), Madrid, SpainVerificeret mail på embl.de
Salvador Capella-GutiérrezBarcelona Supercomputing Centre (BSC)Verificeret mail på bsc.es

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Salvatore Cosentino

Research Associate, Graduate School of Frontier Sciences, The University of Tokyo

Verificeret mail på k.u-tokyo.ac.jp - Startside

Bioinformatics computer science machine learning data analysis


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
Identification of acquired antimicrobial resistance genes E Zankari, H Hasman, S Cosentino, M Vestergaard, S Rasmussen, ... Journal of antimicrobial chemotherapy 67 (11), 2640-2644, 2012	5139	2012
Multilocus sequence typing of total-genome-sequenced bacteria MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ... Journal of clinical microbiology 50 (4), 1355-1361, 2012	2363	2012
PathogenFinder-distinguishing friend from foe using bacterial whole genome sequence data S Cosentino, M Voldby Larsen, F Møller Aarestrup, O Lund PloS one 8 (10), e77302, 2013	560	2013
Benchmarking of methods for genomic taxonomy MV Larsen, S Cosentino, O Lukjancenko, D Saputra, S Rasmussen, ... Journal of clinical microbiology 52 (5), 1529-1539, 2014	374	2014
SonicParanoid: fast, accurate and easy orthology inference S Cosentino, W Iwasaki Bioinformatics 35 (1), 149-151, 2019	126	2019
The Quest for Orthologs orthology benchmark service in 2022 Y Nevers, TEM Jones, D Jyothi, B Yates, M Ferret, L Portell-Silva, L Codo, ... Nucleic Acids Research 50 (W1), W623-W632, 2022	49	2022
The Quest for Orthologs benchmark service and consensus calls in 2020 AM Altenhoff, J Garrayo-Ventas, S Cosentino, D Emms, NM Glover, ... Nucleic acids research 48 (W1), W538-W545, 2020	49	2020
Ten Years of Collaborative Progress in the Quest for Orthologs T Linard, Benjamin and Ebersberger, Ingo and McGlynn, Shawn E and Glover ... Molecular Biology and Evolution 38 (8), 3033–3045, 2021	36	2021
The CGE tool box MV Larsen, KG Joensen, E Zankari, J Ahrenfeldt, O Lukjancenko, ... Applied Genomics of Foodborne Pathogens, 65-90, 2017	10	2017
SonicParanoid2: fast, accurate, and comprehensive orthology inference with machine learning and language models S Cosentino, S Sriswasdi, W Iwasaki Genome Biology 25 (1), 195, 2024	9	2024
Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years M Anda, S Yamanouchi, S Cosentino, M Sakamoto, M Ohkuma, ... Nature Communications 14 (1), 7232, 2023	7	2023
Quest for Orthologs in the Era of Biodiversity Genomics F Langschied, N Bordin, S Cosentino, D Fuentes-Palacios, N Glover, ... Genome biology and evolution 16 (10), evae224, 2024	1	2024
SonicParanoid: extremely fast, accurate, and easy orthology inference S Cosentino, W Iwasaki Bioinformatics. https://doi. org/10.1093/bioinformatics/bty631, 2018	1	2018
New developments for the Quest for Orthologs benchmark service A Altenhoff, Y Nevers, V Tran, D Jyothi, M Martin, S Cosentino, S Majidian, ... NAR genomics and bioinformatics 6 (4), lqae167, 2024		2024
SonicParanoid2: fast, accurate, and comprehensive orthology inference with machine learning and language models S Cosentino, W Iwasaki bioRxiv, 2023.05. 14.540736, 2023		2023
The Good, the Bad and the Deadly: Characterisation of bacteria through DNA analysis S Cosentino, MV Larsen, O Lund Technical University of DenmarkDanmarks Tekniske Universitet, Department of …, 2014		2014

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