Mary Ann Allen
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HIF1A employs CDK8-mediator to stimulate RNAPII elongation in response to hypoxia
MD Galbraith, MA Allen, CL Bensard, X Wang, MK Schwinn, B Qin, ...
Cell 153 (6), 1327-1339, 2013
Basal cell carcinomas in mice arise from hair follicle stem cells and multiple epithelial progenitor populations
M Grachtchouk, J Pero, SH Yang, AN Ermilov, LE Michael, A Wang, ...
The Journal of clinical investigation 121 (5), 1768-1781, 2011
Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms
MA Allen, Z Andrysik, VL Dengler, HS Mellert, A Guarnieri, JA Freeman, ...
Elife 3, e02200, 2014
A global analysis of C. elegans trans-splicing
MA Allen, LDW Hillier, RH Waterston, T Blumenthal
Genome research 21 (2), 255-264, 2011
Hedgehog signaling regulates sebaceous gland development
M Allen, M Grachtchouk, H Sheng, V Grachtchouk, A Wang, L Wei, J Liu, ...
The American journal of pathology 163 (6), 2173-2178, 2003
Genes involved in pre-mRNA 3′-end formation and transcription termination revealed by a lin-15 operon Muv suppressor screen
M Cui, MA Allen, A Larsen, M MacMorris, M Han, T Blumenthal
Proceedings of the National Academy of Sciences 105 (43), 16665-16670, 2008
Human TFIIH kinase CDK7 regulates transcription-associated chromatin modifications
CC Ebmeier, B Erickson, BL Allen, MA Allen, H Kim, N Fong, JR Jacobsen, ...
Cell reports 20 (5), 1173-1186, 2017
Enhancer RNA profiling predicts transcription factor activity
JG Azofeifa, MA Allen, JR Hendrix, JD Rubin, RD Dowell
Genome research 28 (3), 334-344, 2018
Polycistronic pre-mRNA processing in vitro: snRNP and pre-mRNA role reversal in trans-splicing
EL Lasda, MA Allen, T Blumenthal
Genes & development 24 (15), 1645-1658, 2010
An annotation agnostic algorithm for detecting nascent RNA transcripts in GRO-seq
JG Azofeifa, MA Allen, ME Lladser, RD Dowell
IEEE/ACM transactions on computational biology and bioinformatics 14 (5 …, 2016
Detecting differential transcription factor activity from ATAC-Seq data
IJ Tripodi, MA Allen, RD Dowell
Molecules 23 (5), 1136, 2018
FStitch: A fast and simple algorithm for detecting nascent RNA transcripts
J Azofeifa, MA Allen, M Lladser, R Dowell
Proceedings of the 5th ACM Conference on Bioinformatics, Computational …, 2014
A global analysis of trans-splicing in C. elegans
MA Allen, LW Hillier, RH Waterston, T Blumenthal
Genome Res., 2011
RNA Pol II transcription model and interpretation of GRO-seq data
ME Lladser, JG Azofeifa, MA Allen, RD Dowell
Journal of mathematical biology 74 (1-2), 77-97, 2017
Retrospective reflections of a whistleblower: Opinions on misconduct responses
M Allen, R Dowell
Accountability in research 20 (5-6), 339-348, 2013
Identification and characterization of a novel anti-inflammatory lipid isolated from Mycobacterium vaccae, a soil-derived bacterium with immunoregulatory and …
DG Smith, R Martinelli, GS Besra, PA Illarionov, I Szatmari, P Brazda, ...
Psychopharmacology 236 (5), 1653-1670, 2019
Heat shock in C. elegans induces downstream of gene transcription and accumulation of double-stranded RNA
M Melnick, P Gonzales, J Cabral, MA Allen, RD Dowell, CD Link
PloS one 14 (4), 2019
The Cech Symposium: A celebration of 25 years of ribozymes, 10 years of TERT, and 60 years of Tom
Q Vicens, MA Allen, SD Gilbert, B Reznik, AR Gooding, RT Batey
RNA 14 (3), 397-403, 2008
Lessons from eRNAs: understanding transcriptional regulation through the lens of nascent RNAs
JF Cardiello, GJ Sanchez, MA Allen, RD Dowell
Transcription 11 (1), 3-18, 2020
Nascent transcript analysis of glucocorticoid crosstalk with TNF defines primary and cooperative inflammatory repression
4 Sarah K. Sasse1, Margaret Gruca2, Mary A. Allen2, Vineela Kadiyala1 ...
Genome Res., 2019
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