Tao Liu
Tao Liu
Assistant Professor, Roswell Park Comprehensive Cancer Center
Verified email at - Homepage
Cited by
Cited by
Model-based analysis of ChIP-Seq (MACS)
Y Zhang, T Liu, CA Meyer, J Eeckhoute, DS Johnson, BE Bernstein, ...
Genome biology 9 (9), 1-9, 2008
ChIP-seq guidelines and practices used by the ENCODE and modENCODE consortia
SG Landt, GK Marinov, P Kheradpour, A Kundaje, F Pauli, S Batzoglou, ...
Genome Research 22 (9), 1813-1831, 2012
Identifying ChIP-seq enrichment using MACS
J Feng, T Liu, B Qin, Y Zhang, XS Liu
Nature Protocol, 2012
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
EZH2 Oncogenic Activity in Castration-Resistant Prostate Cancer Cells Is Polycomb-Independent
K Xu, ZJ Wu, AC Groner, HH He, C Cai, RT Lis, X Wu, EC Stack, M Loda, ...
Science 338 (6113), 1465-1469, 2012
Differential chromatin marking of introns and expressed exons by H3K36me3
P Kolasinska-Zwierz, T Down, I Latorre, T Liu, XS Liu, J Ahringer
Nature genetics 41 (3), 376-381, 2009
A circadian rhythm orchestrated by histone deacetylase 3 controls hepatic lipid metabolism
D Feng, T Liu, Z Sun, A Bugge, SE Mullican, T Alenghat, XS Liu, MA Lazar
Science 331 (6022), 1315, 2011
Cistrome: an integrative platform for transcriptional regulation studies
T Liu, JA Ortiz, L Taing, CA Meyer, B Lee, Y Zhang, H Shin, SS Wong, ...
Genome Biology 12 (8), R83, 2011
CEAS: cis-regulatory element annotation system
H Shin, T Liu, AK Manrai, XS Liu
Bioinformatics 25 (19), 2605-2606, 2009
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
S Mei, Q Qin, Q Wu, H Sun, R Zheng, C Zang, M Zhu, J Wu, X Shi, L Taing, ...
Nucleic acids research, gkw983, 2016
Comparative analysis of metazoan chromatin organization
JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ...
Nature 512 (7515), 449-452, 2014
Practical guidelines for the comprehensive analysis of ChIP-seq data
T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ...
PLoS computational biology 9 (11), e1003326, 2013
Broad chromosomal domains of histone modification patterns in C. elegans
T Liu, A Rechtsteiner, TA Egelhofer, A Vielle, I Latorre, MS Cheung, ...
Genome research 21 (2), 227-236, 2011
Using MACS to Identify Peaks from ChIP‐Seq Data
J Feng, T Liu, Y Zhang
Current Protocols in Bioinformatics, 2011
Systematic evaluation of factors influencing ChIP-seq fidelity
Y Chen, N Negre, Q Li, JO Mieczkowska, M Slattery, T Liu, Y Zhang, ...
Nature Methods, 2012
Use model-based analysis of ChIP-Seq (MACS) to analyze short reads generated by sequencing protein–DNA interactions in embryonic stem cells
T Liu
Stem Cell Transcriptional Networks, 81-95, 2014
A Comprehensive View of Nuclear Receptor Cancer Cistromes
Q Tang, Y Chen, C Meyer, T Geistlinger, M Lupien, Q Wang, T Liu, ...
Cancer Research, 2011
NONCODE v2. 0: decoding the non-coding
S He, C Liu, G SkogerbÝ, H Zhao, J Wang, T Liu, B Bai, Y Zhao, R Chen
Nucleic acids research 36 (suppl 1), D170, 2008
Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray
H He, J Wang, T Liu, XS Liu, T Li, Y Wang, Z Qian, H Zheng, X Zhu, T Wu, ...
Genome research 17 (10), 1471, 2007
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
Q Qin, S Mei, Q Wu, H Sun, L Li, L Taing, S Chen, F Li, T Liu, C Zang, ...
BMC bioinformatics 17 (1), 1-13, 2016
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