Insights into human genetic variation and population history from 929 diverse genomes A Bergström, SA McCarthy, R Hui, MA Almarri, Q Ayub, P Danecek, ... Science 367 (6484), eaay5012, 2020 | 691 | 2020 |
Robust and scalable inference of population history from hundreds of unphased whole genomes J Terhorst, JA Kamm, YS Song Nature genetics 49 (2), 303-309, 2017 | 663 | 2017 |
The first horse herders and the impact of early Bronze Age steppe expansions into Asia P de Barros Damgaard, R Martiniano, J Kamm, JV Moreno-Mayar, ... Science 360 (6396), eaar7711, 2018 | 415 | 2018 |
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans JV Moreno-Mayar, BA Potter, L Vinner, M Steinrücken, S Rasmussen, ... Nature 553 (7687), 203-207, 2018 | 358 | 2018 |
Efficiently inferring the demographic history of many populations with allele count data J Kamm, J Terhorst, R Durbin, YS Song Journal of the American Statistical Association 115 (531), 1472-1487, 2020 | 140 | 2020 |
Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses E Mick, J Kamm, AO Pisco, K Ratnasiri, JM Babik, G Castañeda, ... Nature communications 11 (1), 5854, 2020 | 135 | 2020 |
Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19 SJ Shah, PN Barish, PA Prasad, A Kistler, N Neff, J Kamm, LM Li, CY Chiu, ... EClinicalMedicine 27, 2020 | 86 | 2020 |
Efficient computation of the joint sample frequency spectra for multiple populations JA Kamm, J Terhorst, YS Song Journal of Computational and Graphical Statistics 26 (1), 182-194, 2017 | 82 | 2017 |
Inference of complex population histories using whole-genome sequences from multiple populations M Steinrücken, J Kamm, JP Spence, YS Song Proceedings of the National Academy of Sciences 116 (34), 17115-17120, 2019 | 80 | 2019 |
SARS-CoV-2 community transmission during shelter-in-place in San Francisco G Chamie, C Marquez, E Crawford, J Peng, M Petersen, D Schwab, ... Medrxiv, 2020.06. 15.20132233, 2020 | 78 | 2020 |
Model‐based detection and analysis of introgressed Neanderthal ancestry in modern humans M Steinrücken, JP Spence, JA Kamm, E Wieczorek, YS Song Molecular ecology 27 (19), 3873-3888, 2018 | 70 | 2018 |
Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by reverse transcription-PCR M Vanaerschot, SA Mann, JT Webber, J Kamm, SM Bell, J Bell, SN Hong, ... Journal of Clinical Microbiology 59 (1), 10.1128/jcm. 02369-20, 2020 | 69 | 2020 |
Sepsis attributed to bacterial contamination of platelets associated with a potential common source—multiple states, 2018 SA Jones MMWR. Morbidity and mortality weekly report 68, 2019 | 56 | 2019 |
Community transmission of severe acute respiratory syndrome coronavirus 2 disproportionately affects the Latinx population during shelter-in-place in San Francisco G Chamie, C Marquez, E Crawford, J Peng, M Petersen, D Schwab, ... Clinical Infectious Diseases 73 (Supplement_2), S127-S135, 2021 | 53 | 2021 |
Two-locus likelihoods under variable population size and fine-scale recombination rate estimation JA Kamm, JP Spence, J Chan, YS Song Genetics 203 (3), 1381-1399, 2016 | 52 | 2016 |
The site frequency spectrum for general coalescents JP Spence, JA Kamm, YS Song Genetics 202 (4), 1549-1561, 2016 | 44 | 2016 |
Complete genome sequence of a novel coronavirus (SARS-CoV-2) isolate from Bangladesh S Saha, R Malaker, MSI Sajib, M Hasanuzzaman, H Rahman, ZB Ahmed, ... Microbiology resource announcements 9 (24), 10.1128/mra. 00568-20, 2020 | 41 | 2020 |
Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics A Tsitsiklis, CM Osborne, J Kamm, K Williamson, K Kalantar, G Dudas, ... The Lancet Microbe 3 (4), e284-e293, 2022 | 37 | 2022 |
Investigating transfusion-related sepsis using culture-independent metagenomic sequencing E Crawford, J Kamm, S Miller, LM Li, S Caldera, A Lyden, D Yokoe, ... Clinical Infectious Diseases 71 (5), 1179-1185, 2020 | 34 | 2020 |
Sepsis from an apheresis platelet contaminated with Acinetobacter calcoaceticus/baumannii complex bacteria and Staphylococcus saprophyticus after pathogen … JL Fridey, SL Stramer, A Nambiar, M Moayeri, S Bakkour, C Langelier, ... Transfusion 60 (9), 1960-1969, 2020 | 25 | 2020 |