Jody Clements
Jody Clements
Senior Software Engineer, Janelia Farm Research Campus, HHMI
Verified email at janelia.hhmi.org
Title
Cited by
Cited by
Year
Pfam: the protein families database
RD Finn, A Bateman, J Clements, P Coggill, RY Eberhardt, SR Eddy, ...
Nucleic acids research 42 (D1), D222-D230, 2014
12754*2014
Patterns of somatic mutation in human cancer genomes
C Greenman, P Stephens, R Smith, GL Dalgliesh, C Hunter, G Bignell, ...
Nature 446 (7132), 153-158, 2007
30122007
HMMER web server: interactive sequence similarity searching
RD Finn, J Clements, SR Eddy
Nucleic acids research 39 (suppl_2), W29-W37, 2011
28002011
The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website
S Bamford, E Dawson, S Forbes, J Clements, R Pettett, A Dogan, ...
British journal of cancer 91 (2), 355-358, 2004
10072004
HMMER web server: 2015 update
RD Finn, J Clements, W Arndt, BL Miller, TJ Wheeler, F Schreiber, ...
Nucleic acids research 43 (W1), W30-W38, 2015
5682015
The catalogue of somatic mutations in cancer (COSMIC)
SA Forbes, G Bhamra, S Bamford, E Dawson, C Kok, J Clements, ...
Current protocols in human genetics 57 (1), 10.11. 1-10.11. 26, 2008
5342008
Somatic mutations of the protein kinase gene family in human lung cancer
H Davies, C Hunter, R Smith, P Stephens, C Greenman, G Bignell, ...
Cancer research 65 (17), 7591-7595, 2005
5082005
COSMIC 2005
S Forbes, J Clements, E Dawson, S Bamford, T Webb, A Dogan, ...
British journal of cancer 94 (2), 318-322, 2006
3742006
Mutation analysis of 24 known cancer genes in the NCI-60 cell line set
ON Ikediobi, H Davies, G Bignell, S Edkins, C Stevens, S O'Meara, ...
Molecular cancer therapeutics 5 (11), 2606-2612, 2006
3712006
A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer
P Stephens, S Edkins, H Davies, C Greenman, C Cox, C Hunter, G Bignell, ...
Nature genetics 37 (6), 590-592, 2005
3672005
A hypermutation phenotype and somatic MSH6 mutations in recurrent human malignant gliomas after alkylator chemotherapy
C Hunter, R Smith, DP Cahill, P Stephens, C Stevens, J Teague, ...
Cancer research 66 (8), 3987-3991, 2006
3532006
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models
TJ Wheeler, J Clements, RD Finn
BMC bioinformatics 15 (1), 7, 2014
1652014
The Dfam database of repetitive DNA families
R Hubley, RD Finn, J Clements, SR Eddy, TA Jones, W Bao, AFA Smit, ...
Nucleic acids research 44 (D1), D81-D89, 2016
1632016
Dfam: a database of repetitive DNA based on profile hidden Markov models
TJ Wheeler, J Clements, SR Eddy, R Hubley, TA Jones, J Jurka, AFA Smit, ...
Nucleic acids research 41 (D1), D70-D82, 2012
1572012
iPfam: a database of protein family and domain interactions found in the Protein Data Bank
RD Finn, BL Miller, J Clements, A Bateman
Nucleic acids research 42 (D1), D364-D373, 2014
1292014
A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs
E Rivas, J Clements, SR Eddy
Nature methods 14 (1), 45-48, 2017
1152017
Sequence analysis of the protein kinase gene family in human testicular germ‐cell tumors of adolescents and adults
G Bignell, R Smith, C Hunter, P Stephens, H Davies, C Greenman, ...
Genes, Chromosomes and Cancer 45 (1), 42-46, 2006
1032006
Cannulated internally threaded bone screw
J Berger
US Patent App. 10/154,923, 2002
692002
ProServer: a simple, extensible Perl DAS server
RD Finn, JW Stalker, DK Jackson, E Kulesha, J Clements, R Pettett
Bioinformatics 23 (12), 1568-1570, 2007
412007
Eddy SR, et al
RD Finn, A Bateman, J Clements, P Coggill, RY Eberhardt
Pfam: the protein families database. 42, 222-30, 2014
332014
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