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Daniel J Wilson
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Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
TM Walker, CLC Ip, RH Harrell, JT Evans, G Kapatai, MJ Dedicoat, ...
The Lancet Infectious Diseases, 2012
8232012
Transforming clinical microbiology with bacterial genome sequencing
X Didelot, R Bowden, DJ Wilson, TEA Peto, DW Crook
Nature Reviews Genetics 13 (9), 601-612, 2012
7402012
Diverse sources of C. difficile infection identified on whole-genome sequencing
DW Eyre, ML Cule, DJ Wilson, D Griffiths, A Vaughan, L O'Connor, CLC Ip, ...
N Engl J Med 369, 1195-1205, 2013
6452013
ClonalFrameML: efficient inference of recombination in whole bacterial genomes
X Didelot, DJ Wilson
PLoS computational biology 11 (2), e1004041, 2015
5902015
Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study
TM Walker, TA Kohl, SV Omar, J Hedge, CDO Elias, P Bradley, Z Iqbal, ...
The Lancet infectious diseases 15 (10), 1193-1202, 2015
5132015
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
P Bradley, NC Gordon, TM Walker, L Dunn, S Heys, B Huang, S Earle, ...
Nature communications 6 (1), 1-15, 2015
4892015
Tracing the source of campylobacteriosis
DJ Wilson, E Gabriel, AJH Leatherbarrow, J Cheesbrough, S Gee, ...
PLoS genetics 4 (9), e1000203, 2008
4722008
Campylobacter Genotyping to Determine the Source of Human Infection
SK Sheppard, JF Dallas, NJC Strachan, M MacRae, ND McCarthy, ...
Clinical Infectious Diseases 48 (8), 1072-1078, 2009
4332009
Within-host evolution of bacterial pathogens
X Didelot, AS Walker, TE Peto, DW Crook, DJ Wilson
Nature Reviews Microbiology 14 (3), 150-162, 2016
3422016
Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing
NC Gordon, JR Price, K Cole, R Everitt, M Morgan, J Finney, AM Kearns, ...
Journal of clinical microbiology 52 (4), 1182-1191, 2014
3102014
Distribution of Serogroups and Genotypes among Disease-Associated and Carried Isolates of Neisseria meningitidis from the Czech Republic, Greece, and Norway
SP Yazdankhah, P Kriz, G Tzanakaki, J Kremastinou, J Kalmusova, ...
Journal of Clinical Microbiology 42 (11), 5146-5153, 2004
2942004
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease
BC Young, T Golubchik, EM Batty, R Fung, H Larner-Svensson, ...
Proceedings of the National Academy of Sciences 109 (12), 4550-4555, 2012
2762012
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance
DW Eyre, T Golubchik, NC Gordon, R Bowden, P Piazza, EM Batty, ...
BMJ open 2 (3), e001124, 2012
2742012
Effects of control interventions on Clostridium difficile infection in England: an observational study
KE Dingle, X Didelot, TP Quan, DW Eyre, N Stoesser, T Golubchik, ...
The Lancet Infectious Diseases 17 (4), 411-421, 2017
2682017
Estimating diversifying selection and functional constraint in the presence of recombination
DJ Wilson, G McVean
Genetics 172 (3), 1411-1425, 2006
2602006
Genetic analysis of meningococci carried by children and young adults
H Claus, MCJ Maiden, DJ Wilson, ND McCarthy, KA Jolley, R Urwin, ...
The Journal of infectious diseases 191 (8), 1263-1271, 2005
2592005
Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
MBio 7 (2), e02162-15, 2016
248*2016
Prediction of susceptibility to first-line tuberculosis drugs by DNA sequencing
CRyPTIC Consortium and the 100,000 Genomes Project
New England Journal of Medicine 379 (15), 1403-1415, 2018
2292018
Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC
AE Sheppard, N Stoesser, DJ Wilson, R Sebra, A Kasarskis, LW Anson, ...
Antimicrobial agents and chemotherapy 60 (6), 3767-3778, 2016
2182016
Rapid Evolution and the Importance of Recombination to the Gastroenteric Pathogen Campylobacter jejuni
DJ Wilson, E Gabriel, AJH Leatherbarrow, J Cheesbrough, S Gee, ...
Molecular biology and evolution 26 (2), 385-397, 2009
2172009
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