Joel Dudley
Joel Dudley
Institute Director and Associate Professor, Icahn School of Medicine at Mount Sinai
Verified email at mssm.edu - Homepage
TitleCited byYear
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
K Tamura, J Dudley, M Nei, S Kumar
Molecular biology and evolution 24 (8), 1596-1599, 2007
325572007
MEGA: molecular evolutionary genetics analysis software for microcomputers
S Kumar, K Tamura, M Nei
Bioinformatics 10 (2), 189-191, 1994
7177*1994
Personal omics profiling reveals dynamic molecular and medical phenotypes
R Chen, GI Mias, J Li-Pook-Than, L Jiang, HYK Lam, R Chen, E Miriami, ...
Cell 148 (6), 1293-1307, 2012
10112012
TimeTree: a public knowledge-base of divergence times among organisms
SB Hedges, J Dudley, S Kumar
Bioinformatics 22 (23), 2971-2972, 2006
9772006
Clinical assessment incorporating a personal genome
EA Ashley, AJ Butte, MT Wheeler, R Chen, TE Klein, FE Dewey, ...
The Lancet 375 (9725), 1525-1535, 2010
6952010
Deep patient: an unsupervised representation to predict the future of patients from the electronic health records
R Miotto, L Li, BA Kidd, JT Dudley
Scientific reports 6 (1), 1-10, 2016
5932016
Discovery and preclinical validation of drug indications using compendia of public gene expression data
M Sirota, JT Dudley, J Kim, AP Chiang, AA Morgan, A Sweet-Cordero, ...
Science translational medicine 3 (96), 96ra77-96ra77, 2011
5562011
Deep learning for healthcare: review, opportunities and challenges
R Miotto, F Wang, S Wang, X Jiang, JT Dudley
Briefings in bioinformatics 19 (6), 1236-1246, 2018
4192018
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease
JT Dudley, M Sirota, M Shenoy, RK Pai, S Roedder, AP Chiang, ...
Science translational medicine 3 (96), 96ra76-96ra76, 2011
4062011
Gene expression elucidates functional impact of polygenic risk for schizophrenia
M Fromer, P Roussos, SK Sieberts, JS Johnson, DH Kavanagh, ...
Nature neuroscience 19 (11), 1442, 2016
4032016
Exploiting drug–disease relationships for computational drug repositioning
JT Dudley, T Deshpande, AJ Butte
Briefings in bioinformatics 12 (4), 303-311, 2011
3392011
Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets
S Suthram, JT Dudley, AP Chiang, R Chen, TJ Hastie, AJ Butte
PLoS computational biology 6 (2), 2010
3042010
Identification of type 2 diabetes subgroups through topological analysis of patient similarity
L Li, WY Cheng, BS Glicksberg, O Gottesman, R Tamler, R Chen, ...
Science translational medicine 7 (311), 311ra174-311ra174, 2015
2702015
A drug repositioning approach identifies tricyclic antidepressants as inhibitors of small cell lung cancer and other neuroendocrine tumors
NS Jahchan, JT Dudley, PK Mazur, N Flores, D Yang, A Palmerton, ...
Cancer discovery 3 (12), 1364-1377, 2013
2382013
Mega
S Kumar
Molecular evolutionary genetics analysis, 1993
2021993
Multiscale analysis of independent Alzheimer’s cohorts finds disruption of molecular, genetic, and clinical networks by human herpesvirus
B Readhead, JV Haure-Mirande, CC Funk, MA Richards, P Shannon, ...
Neuron 99 (1), 64-82. e7, 2018
1882018
Geospatial resolution of human and bacterial diversity with city-scale metagenomics
E Afshinnekoo, C Meydan, S Chowdhury, D Jaroudi, C Boyer, N Bernstein, ...
Cell systems 1 (1), 72-87, 2015
1842015
Unifying immunology with informatics and multiscale biology
BA Kidd, LA Peters, EE Schadt, JT Dudley
Nature immunology 15 (2), 118, 2014
1342014
In silico research in the era of cloud computing
JT Dudley, AJ Butte
Nature biotechnology 28 (11), 1181-1185, 2010
1322010
Mutations in tetratricopeptide repeat domain 7A result in a severe form of very early onset inflammatory bowel disease
Y Avitzur, C Guo, LA Mastropaolo, E Bahrami, H Chen, Z Zhao, A Elkadri, ...
Gastroenterology 146 (4), 1028-1039, 2014
1302014
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