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Pierre-Yves Dupont
Pierre-Yves Dupont
Senior bioinformatician, ESR, NZ
Verified email at esr.cri.nz
Title
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Cited by
Year
Fungal endophyte infection of ryegrass reprograms host metabolism and alters development
PY Dupont, CJ Eaton, JJ Wargent, S Fechtner, P Solomon, J Schmid, ...
New Phytologist 208 (4), 1227-1240, 2015
1682015
Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus EpichloŽ festucae
DJ Winter, ARD Ganley, CA Young, I Liachko, CL Schardl, PY Dupont, ...
PLoS genetics 14 (10), e1007467, 2018
672018
A Core Gene Set Describes the Molecular Basis of Mutualism and Antagonism in EpichloŽ spp.
CJ Eaton, PY Dupont, P Solomon, W Clayton, B Scott, MP Cox
Molecular Plant-Microbe Interactions 28 (3), 218-231, 2015
602015
Host Tissue Environment Directs Activities of an EpichloŽ Endophyte, While It Induces Systemic Hormone and Defense Responses in Its Native Perennial Ryegrass†…
J Schmid, R Day, N Zhang, PY Dupont, MP Cox, CL Schardl, N Minards, ...
Molecular plant-microbe interactions 30 (2), 138-149, 2017
592017
Genomes of plant-associated Clavicipitaceae
CL Schardl, CA Young, N Moore, N Krom, PY Dupont, J Pan, S Florea, ...
Advances in Botanical Research 70, 291-327, 2014
422014
Genetic diversity of Phytophthora pluvialis, a pathogen of conifers, in New Zealand and the west coast of the United States of America
S Brar, JF Tabima, RL McDougal, PY Dupont, N Feau, RC Hamelin, ...
Plant pathology 67 (5), 1131-1139, 2018
272018
EpichloŽ hybrida, sp. nov., an emerging model system for investigating fungal allopolyploidy
MA Campbell, BA Tapper, WR Simpson, RD Johnson, W Mace, A Ram, ...
Mycologia 109 (5), 715-729, 2017
262017
Genomic data quality impacts automated detection of lateral gene transfer in fungi
PY Dupont, MP Cox
G3: Genes, Genomes, Genetics 7 (4), 1301-1314, 2017
242017
Complex epigenetic regulation of alkaloid biosynthesis and host interaction by heterochromatin protein I in a fungal endophyte-plant symbiosis
T Chujo, Y Lukito, CJ Eaton, PY Dupont, LJ Johnson, D Winter, MP Cox, ...
Fungal Genetics and Biology 125, 71-83, 2019
222019
HyLiTE: accurate and flexible analysis of gene expression in hybrid and allopolyploid species
W Duchemin, PY Dupont, MA Campbell, ARD Ganley, MP Cox
BMC bioinformatics 16 (1), 8, 2015
202015
Global population genomics of the forest pathogen Dothistroma septosporum reveal chromosome duplications in high dothistromin‐producing strains
RE Bradshaw, AD Sim, P Chettri, PY Dupont, Y Guo, L Hunziker, ...
Molecular plant pathology 20 (6), 784-799, 2019
152019
Chromatin‐level regulation of the fragmented dothistromin gene cluster in the forest pathogen Dothistroma septosporum
P Chettri, PY Dupont, RE Bradshaw
Molecular microbiology 107 (4), 508-522, 2018
122018
Functional analysis of RXLR effectors from the New Zealand kauri dieback pathogen Phytophthora agathidicida
Y Guo, PY Dupont, CH Mesarich, B Yang, RL McDougal, P Panda, ...
Molecular plant pathology 21 (9), 1131-1148, 2020
102020
DsEcp2-1 is a polymorphic effector that restricts growth of Dothistroma septosporum in pine
Y Guo, L Hunziker, CH Mesarich, P Chettri, PY Dupont, RJ Ganley, ...
Fungal Genetics and Biology 135, 103300, 2020
82020
Isolation and characterization of Clostridium difficile from a small survey of wastewater, food and animals in New Zealand
L Rivas, PY Dupont, BJ Gilpin, AJ Cornelius
Letters in Applied Microbiology 70 (1), 29-35, 2020
82020
Analysis of simple sequence repeat (SSR) structure and sequence within EpichloŽ endophyte genomes reveals impacts on gene structure and insights into†…
W Clayton, CJ Eaton, PY Dupont, T Gillanders, N Cameron, S Saikia, ...
PloS one 12 (9), e0183748, 2017
82017
Evolution of polyketide synthesis in a Dothideomycete forest pathogen
IK Ozturk, P Chettri, PY Dupont, I Barnes, RL McDougal, GG Moore, A Sim, ...
Fungal genetics and biology 106, 42-50, 2017
82017
Computational analysis of the transcriptional regulation of the adenine nucleotide translocator isoform 4 gene and its role in spermatozoid glycolytic metabolism
PY Dupont, G Stepien
Gene 487 (1), 38-45, 2011
82011
An outbreak of multiple genotypes of Listeria monocytogenes in New Zealand linked to contaminated ready‐to‐eat meats—a retrospective analysis using whole†…
L Rivas, PY Dupont, M Wilson, M Rohleder, B Gilpin
Letters in Applied Microbiology 69 (6), 392-398, 2019
72019
Use of sonication for enhanced sampling of attached microbes from groundwater systems
M Close, P Abraham, J Webber, E Cowey, B Humphries, G Fenwick, ...
Groundwater, 2020
62020
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