Yuanyuan Cheng
Yuanyuan Cheng
Wobble Genomics
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Reversible epigenetic down-regulation of MHC molecules by devil facial tumour disease illustrates immune escape by a contagious cancer
HV Siddle, A Kreiss, C Tovar, CK Yuen, Y Cheng, K Belov, K Swift, ...
Proceedings of the National Academy of Sciences 110 (13), 5103-5108, 2013
MHC gene copy number variation in Tasmanian devils: implications for the spread of a contagious cancer
HV Siddle, J Marzec, Y Cheng, M Jones, K Belov
Proceedings of the Royal Society B: Biological Sciences 277 (1690), 2001-2006, 2010
The genome sequence of taurine cattle: a window to ruminant biology and evolution.
S Bovine Genome, CG Elsik, RL Tellam, KC Worley, RA Gibbs, DM Muzny, ...
Science 324 (5926), 522-528, 2009
Adaptation and conservation insights from the koala genome
RN Johnson, D O’Meally, Z Chen, GJ Etherington, SYW Ho, WJ Nash, ...
Nature genetics 50 (8), 1102-1111, 2018
The Tasmanian devil microbiome—implications for conservation and management
Y Cheng, S Fox, D Pemberton, C Hogg, AT Papenfuss, K Belov
Microbiome 3 (1), 1-11, 2015
Genomic restructuring in the Tasmanian devil facial tumour: chromosome painting and gene mapping provide clues to evolution of a transmissible tumour
JE Deakin, HS Bender, AM Pearse, W Rens, PCM O'Brien, ...
PLoS genetics 8 (2), e1002483, 2012
Allorecognition in the Tasmanian devil (Sarcophilus harrisii), an endangered marsupial species with limited genetic diversity
A Kreiss, Y Cheng, F Kimble, B Wells, S Donovan, K Belov, GM Woods
PLoS one 6 (7), e22402, 2011
The tuatara genome reveals ancient features of amniote evolution
NJ Gemmell, K Rutherford, S Prost, M Tollis, D Winter, JR Macey, ...
Nature 584 (7821), 403-409, 2020
Regression of devil facial tumour disease following immunotherapy in immunised Tasmanian devils
C Tovar, RJ Pye, A Kreiss, Y Cheng, GK Brown, J Darby, RC Malley, ...
Scientific reports 7 (1), 1-14, 2017
Low MHC class II diversity in the Tasmanian devil (Sarcophilus harrisii)
Y Cheng, C Sanderson, M Jones, K Belov
Immunogenetics 64 (7), 525-533, 2012
Evolution of the avian β-defensin and cathelicidin genes
Y Cheng, MD Prickett, W Gutowska, R Kuo, K Belov, DW Burt
BMC evolutionary biology 15 (1), 1-17, 2015
Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC
Y Cheng, A Stuart, K Morris, R Taylor, H Siddle, J Deakin, M Jones, ...
BMC genomics 13 (1), 1-14, 2012
Platypus and echidna genomes reveal mammalian biology and evolution
Y Zhou, L Shearwin-Whyatt, J Li, Z Song, T Hayakawa, D Stevens, ...
Nature 592 (7856), 756-762, 2021
Illuminating the dark side of the human transcriptome with long read transcript sequencing
RI Kuo, Y Cheng, R Zhang, JWS Brown, J Smith, AL Archibald, DW Burt
BMC genomics 21 (1), 1-22, 2020
MHC-linked and un-linked class I genes in the wallaby
HV Siddle, JE Deakin, P Coggill, E Hart, Y Cheng, ESW Wong, J Harrow, ...
BMC genomics 10 (1), 1-15, 2009
New insights into the role of MHC diversity in devil facial tumour disease
A Lane, Y Cheng, B Wright, R Hamede, L Levan, M Jones, B Ujvari, ...
PLoS One 7 (6), e36955, 2012
Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions
TG Stephens, RA González-Pech, Y Cheng, AR Mohamed, DW Burt, ...
BMC biology 18 (1), 1-21, 2020
Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium
RA González-Pech, TG Stephens, Y Chen, AR Mohamed, Y Cheng, ...
BMC biology 19 (1), 1-22, 2021
Cathelicidins in the Tasmanian devil (Sarcophilus harrisii)
E Peel, Y Cheng, JT Djordjevic, S Fox, TC Sorrell, K Belov
Scientific reports 6 (1), 1-9, 2016
Diversity in the Toll-like receptor genes of the Tasmanian devil (Sarcophilus harrisii)
J Cui, Y Cheng, K Belov
Immunogenetics 67 (3), 195-201, 2015
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