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Sandra Castillo
Sandra Castillo
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MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
T Pluskal, S Castillo, A Villar-Briones, M Orešič
BMC bioinformatics 11, 1-11, 2010
37392010
Novel theranostic opportunities offered by characterization of altered membrane lipid metabolism in breast cancer progression
M Hilvo, C Denkert, L Lehtinen, B Müller, S Brockmöller, ...
Cancer research 71 (9), 3236-3245, 2011
5482011
Association of lipidome remodeling in the adipocyte membrane with acquired obesity in humans
KH Pietiläinen, T Rog, T Seppänen-Laakso, S Virtue, P Gopalacharyulu, ...
PLoS biology 9 (6), e1000623, 2011
2712011
Algorithms and tools for the preprocessing of LC–MS metabolomics data
S Castillo, P Gopalacharyulu, L Yetukuri, M Orešič
Chemometrics and Intelligent Laboratory Systems 108 (1), 23-32, 2011
2102011
Data analysis tool for comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry
S Castillo, I Mattila, J Miettinen, M Oresic, T Hyötyläinen
Analytical Chemistry 83 (8), 3058-3067, 2011
1952011
Statistical methods for handling unwanted variation in metabolomics data
AMD Livera, M Sysi-Aho, L Jacob, JA Gagnon-Bartsch, S Castillo, ...
Analytical chemistry 87 (7), 3606-3615, 2015
1792015
Prediction of non-alcoholic fatty-liver disease and liver fat content by serum molecular lipids
M Orešič, T Hyötyläinen, A Kotronen, P Gopalacharyulu, H Nygren, ...
Diabetologia 56, 2266-2274, 2013
1622013
Liquid chromatography-mass spectrometry (LC-MS)-based lipidomics for studies of body fluids and tissues
H Nygren, T Seppänen-Laakso, S Castillo, T Hyötyläinen, M Orešič
Metabolic Profiling: Methods and Protocols, 247-257, 2011
1522011
Bioinformatics and computational methods for lipidomics
PS Niemelä, S Castillo, M Sysi-Aho, M Orešič
Journal of Chromatography B 877 (26), 2855-2862, 2009
1002009
Splanchnic balance of free fatty acids, endocannabinoids, and lipids in subjects with nonalcoholic fatty liver disease
J Westerbacka, A Kotronen, BA Fielding, J Wahren, L Hodson, J Perttilä, ...
Gastroenterology 139 (6), 1961-1971. e1, 2010
812010
Inheritance of brewing-relevant phenotypes in constructed Saccharomyces cerevisiae × Saccharomyces eubayanus hybrids
K Krogerus, T Seppänen-Laakso, S Castillo, B Gibson
Microbial cell factories 16, 1-22, 2017
632017
Enhanced triacylglycerol production with genetically modified Trichosporon oleaginosus
K Koivuranta, S Castillo, P Jouhten, L Ruohonen, M Penttilä, MG Wiebe
Frontiers in microbiology 9, 378878, 2018
292018
Genome wide analysis of protein production load in Trichoderma reesei
TM Pakula, H Nygren, D Barth, M Heinonen, S Castillo, M Penttilä, ...
Biotechnology for biofuels 9, 1-26, 2016
292016
2: Modular framework for 267 processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC 268
T Pluskal, S Castillo, A Villar-Briones, MMZ Orešič
Bioinformatics 11 (395), 269, 2010
252010
Exploring the potential of Saccharomyces eubayanus as a parent for new interspecies hybrid strains in winemaking
F Magalhães, K Krogerus, S Castillo, A Ortiz-Julien, S Dequin, B Gibson
FEMS Yeast Research 17 (5), fox049, 2017
232017
Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction
S Castillo, D Barth, M Arvas, TM Pakula, E Pitkänen, P Blomberg, ...
Biotechnology for biofuels 9, 1-20, 2016
212016
Principal metabolic flux mode analysis
S Bhadra, P Blomberg, S Castillo, J Rousu
Bioinformatics 34 (14), 2409-2417, 2018
172018
Yeast genome-scale metabolic models for simulating genotype–phenotype relations
S Castillo, KR Patil, P Jouhten
Yeasts in biotechnology and human health: physiological genomic approaches …, 2019
132019
Lager Yeast Design Through Meiotic Segregation of a Saccharomyces cerevisiae × Saccharomyces eubayanus Hybrid
K Krogerus, F Magalhães, S Castillo, G Peddinti, V Vidgren, M De Chiara, ...
Frontiers in Fungal Biology 2, 733655, 2021
122021
Machine learning of protein interactions in fungal secretory pathways
J Kludas, M Arvas, S Castillo, T Pakula, M Oja, C Brouard, J Jäntti, ...
PloS one 11 (7), e0159302, 2016
112016
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Artikler 1–20