Douglas Densmore
TitleCited byYear
Genetic circuit design automation
AAK Nielsen, BS Der, J Shin, P Vaidyanathan, V Paralanov, ...
Science 352 (6281), aac7341, 2016
4322016
A platform-based taxonomy for ESL design
D Densmore, R Passerone
IEEE Design & Test of Computers 23 (5), 359-374, 2006
2212006
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ...
Nature biotechnology 32 (6), 545-550, 2014
2162014
Functional optimization of gene clusters by combinatorial design and assembly
MJ Smanski, S Bhatia, D Zhao, YJ Park, LBA Woodruff, G Giannoukos, ...
Nature biotechnology 32 (12), 1241, 2014
1982014
Eugene–a domain specific language for specifying and constraining synthetic biological parts, devices, and systems
L Bilitchenko, A Liu, S Cheung, E Weeding, B Xia, M Leguia, JC Anderson, ...
PloS one 6 (4), e18882, 2011
1302011
A next-generation design framework for platform-based design
A Davare, D Densmore, T Meyerowitz, A Pinto, A Sangiovanni-Vincentelli, ...
Conference on using hardware design and verification languages (DVCon) 152, 2007
1202007
An end-to-end workflow for engineering of biological networks from high-level specifications
J Beal, R Weiss, D Densmore, A Adler, E Appleton, J Babb, S Bhatia, ...
ACS Synthetic Biology 1 (8), 317-331, 2012
922012
DeviceEditor visual biological CAD canvas
J Chen, D Densmore, TS Ham, JD Keasling, NJ Hillson
Journal of biological engineering 6 (1), 1, 2012
842012
Algorithms for automated DNA assembly
D Densmore, THC Hsiau, JT Kittleson, W DeLoache, C Batten, ...
Nucleic acids research 38 (8), 2607-2616, 2010
692010
CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology
SV Iverson, TL Haddock, J Beal, DM Densmore
ACS synthetic biology 5 (1), 99-103, 2016
672016
metroII: A design environment for cyber-physical systems
A Davare, D Densmore, L Guo, R Passerone, AL Sangiovanni-Vincentelli, ...
ACM Transactions on Embedded Computing Systems (TECS) 12 (1s), 1-31, 2013
652013
Developer's and User's Guide to Clotho v2. 0: A Software Platform for the Creation of Synthetic Biological Systems
B Xia, S Bhatia, B Bubenheim, M Dadgar, D Densmore, JC Anderson
Methods in enzymology 498, 97-135, 2011
622011
Pigeon: a design visualizer for synthetic biology
S Bhatia, D Densmore
ACS synthetic biology 2 (6), 348-350, 2013
542013
Automated selection of synthetic biology parts for genetic regulatory networks
F Yaman, S Bhatia, A Adler, D Densmore, J Beal
ACS synthetic biology 1 (8), 332-344, 2012
532012
Interactive assembly algorithms for molecular cloning
E Appleton, J Tao, T Haddock, D Densmore
Nature methods 11 (6), 657, 2014
522014
Sharing structure and function in biological design with SBOL 2.0
N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ...
ACS synthetic biology 5 (6), 498-506, 2016
502016
Essential information for synthetic DNA sequences
J Peccoud, JC Anderson, D Chandran, D Densmore, M Galdzicki, ...
Nature biotechnology 29 (1), 22, 2011
462011
A platform-based design environment for synthetic biological systems
D Densmore, A Van Devender, M Johnson, N Sritanyaratana
The Fifth Richard Tapia Celebration of Diversity in Computing Conference …, 2009
432009
Classification, customization, and characterization: Using milp for task allocation and scheduling
A Davare, J Chong, Q Zhu, DM Densmore, AL Sangiovanni-Vincentelli
Systems Research, 2006
342006
Synthetic biology open language (SBOL) version 1.1. 0
M Galdzicki, M Wilson, CA Rodriguez, MR Pocock, E Oberortner, L Adam, ...
332012
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Articles 1–20