Benilton S Carvalho
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Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
A framework for oligonucleotide microarray preprocessing
BS Carvalho, RA Irizarry
Bioinformatics 26 (19), 2363-2367, 2010
Comprehensive molecular characterization of muscle-invasive bladder cancer
AG Robertson, J Kim, H Al-Ahmadie, J Bellmunt, G Guo, AD Cherniack, ...
Cell 171 (3), 540-556. e25, 2017
Comprehensive high-throughput arrays for relative methylation (CHARM)
RA Irizarry, C Ladd-Acosta, B Carvalho, H Wu, SA Brandenburg, ...
Genome research 18 (5), 780-790, 2008
Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
B Carvalho, H Bengtsson, TP Speed, RA Irizarry
Biostatistics 8 (2), 485-499, 2007
Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis
JMJ Weaver, CS Ross-Innes, N Shannon, AG Lynch, T Forshew, ...
Nature genetics 46 (8), 837-843, 2014
Estimation and assessment of raw copy numbers at the single locus level
H Bengtsson, R Irizarry, B Carvalho, TP Speed
Bioinformatics 24 (6), 759-767, 2008
Arterial stiffness is associated with regional ventricular systolic and diastolic dysfunction: the Multi-Ethnic Study of Atherosclerosis
VRS Fernandes, JF Polak, S Cheng, BD Rosen, B Carvalho, K Nasir, ...
Arteriosclerosis, thrombosis, and vascular biology 28 (1), 194-201, 2008
Using the R package crlmm for genotyping and copy number estimation
RB Scharpf, RA Irizarry, ME Ritchie, B Carvalho, I Ruczinski
Journal of statistical software 40 (12), 1, 2011
Subclinical atherosclerosis and incipient regional myocardial dysfunction in asymptomatic individuals: the Multi-Ethnic Study of Atherosclerosis (MESA)
VRS Fernandes, JF Polak, T Edvardsen, B Carvalho, A Gomes, ...
Journal of the American College of Cardiology 47 (12), 2420-2428, 2006
Resting heart rate as predictor for left ventricular dysfunction and heart failure: MESA (Multi-Ethnic Study of Atherosclerosis)
A Opdahl, BA Venkatesh, VRS Fernandes, CO Wu, K Nasir, EY Choi, ...
Journal of the American College of Cardiology 63 (12), 1182-1189, 2014
Genome‐wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays
M Tuefferd, A De Bondt, I Van Den Wyngaert, W Talloen, T Verbeke, ...
Genes, Chromosomes and Cancer 47 (11), 957-964, 2008
Quantifying uncertainty in genotype calls
BS Carvalho, TA Louis, RA Irizarry
Bioinformatics 26 (2), 242-249, 2010
Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences
S Yegnasubramanian, Z Wu, MC Haffner, D Esopi, MJ Aryee, R Badrinath, ...
BMC genomics 12 (1), 1-19, 2011
Educational and socioeconomic background of undergraduates and academic performance: consequences for affirmative action programs at a Brazilian research university
RHL Pedrosa, JNW Dachs, RP Maia, CY Andrade, BS Carvalho
Imhe, 2006
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
ME Ritchie, R Liu, BS Carvalho, RA Irizarry, ...
BMC bioinformatics 12 (1), 68, 2011
Enhanced infarct border zone function and altered mechanical activation predict inducibility of monomorphic ventricular tachycardia in patients with ischemic cardiomyopathy
VRS Fernandes, KC Wu, BD Rosen, A Schmidt, AC Lardo, N Osman, ...
Radiology 245 (3), 712-719, 2007
Statistical genomics: methods and protocols
F Hahne, R Ivanek
Chapter visualizing genomic data using Gviz and Bioconductor. New York …, 2016
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
ME Ritchie, BS Carvalho, KN Hetrick, S Tavaré, RA Irizarry
Bioinformatics 25 (19), 2621-2623, 2009
A multilevel model to address batch effects in copy number estimation using SNP arrays
RB Scharpf, I Ruczinski, B Carvalho, B Doan, A Chakravarti, RA Irizarry
Biostatistics 12 (1), 33-50, 2011
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Articles 1–20