Benilton S Carvalho
TitleCited byYear
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115, 2015
14002015
A framework for oligonucleotide microarray preprocessing
BS Carvalho, RA Irizarry
Bioinformatics 26 (19), 2363-2367, 2010
7472010
Comprehensive molecular characterization of muscle-invasive bladder cancer
AG Robertson, J Kim, H Al-Ahmadie, J Bellmunt, G Guo, AD Cherniack, ...
Cell 171 (3), 540-556. e25, 2017
4822017
Comprehensive high-throughput arrays for relative methylation (CHARM)
RA Irizarry, C Ladd-Acosta, B Carvalho, H Wu, SA Brandenburg, ...
Genome research 18 (5), 780-790, 2008
4242008
Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
B Carvalho, H Bengtsson, TP Speed, RA Irizarry
Biostatistics 8 (2), 485-499, 2006
2862006
Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis
JMJ Weaver, CS Ross-Innes, N Shannon, AG Lynch, T Forshew, ...
Nature genetics 46 (8), 837, 2014
2252014
Estimation and assessment of raw copy numbers at the single locus level
H Bengtsson, R Irizarry, B Carvalho, TP Speed
Bioinformatics 24 (6), 759-767, 2008
1772008
Arterial stiffness is associated with regional ventricular systolic and diastolic dysfunction: the Multi-Ethnic Study of Atherosclerosis
VRS Fernandes, JF Polak, S Cheng, BD Rosen, B Carvalho, K Nasir, ...
Arteriosclerosis, thrombosis, and vascular biology 28 (1), 194-201, 2008
1252008
Using the R package crlmm for genotyping and copy number estimation
RB Scharpf, RA Irizarry, ME Ritchie, B Carvalho, I Ruczinski
Journal of statistical software 40 (12), 1, 2011
1142011
Subclinical atherosclerosis and incipient regional myocardial dysfunction in asymptomatic individuals: the Multi-Ethnic Study of Atherosclerosis (MESA)
VRS Fernandes, JF Polak, T Edvardsen, B Carvalho, A Gomes, ...
Journal of the American College of Cardiology 47 (12), 2420-2428, 2006
1142006
Resting heart rate as predictor for left ventricular dysfunction and heart failure: MESA (Multi-Ethnic Study of Atherosclerosis)
A Opdahl, BA Venkatesh, VRS Fernandes, CO Wu, K Nasir, EY Choi, ...
Journal of the American College of Cardiology 63 (12), 1182-1189, 2014
812014
Genome‐wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays
M Tuefferd, A De Bondt, I Van Den Wyngaert, W Talloen, T Verbeke, ...
Genes, Chromosomes and Cancer 47 (11), 957-964, 2008
622008
Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences
S Yegnasubramanian, Z Wu, MC Haffner, D Esopi, MJ Aryee, R Badrinath, ...
BMC genomics 12 (1), 313, 2011
592011
Quantifying uncertainty in genotype calls
BS Carvalho, TA Louis, RA Irizarry
Bioinformatics 26 (2), 242-249, 2009
582009
Enhanced infarct border zone function and altered mechanical activation predict inducibility of monomorphic ventricular tachycardia in patients with ischemic cardiomyopathy
VRS Fernandes, KC Wu, BD Rosen, A Schmidt, AC Lardo, N Osman, ...
Radiology 245 (3), 712-719, 2007
512007
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
ME Ritchie, R Liu, BS Carvalho, RA Irizarry, ...
BMC bioinformatics 12 (1), 68, 2011
462011
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
ME Ritchie, BS Carvalho, KN Hetrick, S Tavaré, RA Irizarry
Bioinformatics 25 (19), 2621-2623, 2009
462009
A multilevel model to address batch effects in copy number estimation using SNP arrays
RB Scharpf, I Ruczinski, B Carvalho, B Doan, A Chakravarti, RA Irizarry
Biostatistics 12 (1), 33-50, 2010
422010
Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays
S Lin, B Carvalho, DJ Cutler, DE Arking, A Chakravarti, RA Irizarry
Genome biology 9 (4), R63, 2008
412008
Educational and socioeconomic background of undergraduates and academic performance: consequences for affirmative action programs at a Brazilian research university
RHL Pedrosa, JNW Dachs, RP Maia, CY Andrade, BS Carvalho
Imhe, 2006
412006
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Articles 1–20