| Deep learning for cellular image analysis E Moen, D Bannon, T Kudo, W Graf, M Covert, D Van Valen Nature methods 16 (12), 1233-1246, 2019 | 1095 | 2019 |
| A structured tumor-immune microenvironment in triple negative breast cancer revealed by multiplexed ion beam imaging L Keren, M Bosse, D Marquez, R Angoshtari, S Jain, S Varma, SR Yang, ... Cell 174 (6), 1373-1387. e19, 2018 | 905 | 2018 |
| Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments DA Van Valen, T Kudo, KM Lane, DN Macklin, NT Quach, MM DeFelice, ... PLOS Computational Biology 12 (11), 1-24, 2016 | 605 | 2016 |
| Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning NF Greenwald, G Miller, E Moen, A Kong, A Kagel, T Dougherty, ... Nature biotechnology 40 (4), 555-565, 2022 | 598 | 2022 |
| Single-cell metabolic profiling of human cytotoxic T cells FJ Hartmann, D Mrdjen, E McCaffrey, DR Glass, NF Greenwald, ... Nature biotechnology 39 (2), 186-197, 2021 | 270 | 2021 |
| Measuring signaling and RNA-seq in the same cell links gene expression to dynamic patterns of NF-κB activation K Lane, D Van Valen, MM DeFelice, DN Macklin, T Kudo, A Jaimovich, ... Cell systems 4 (4), 458-469. e5, 2017 | 171 | 2017 |
| The immunoregulatory landscape of human tuberculosis granulomas EF McCaffrey, M Donato, L Keren, Z Chen, A Delmastro, MB Fitzpatrick, ... Nature immunology 23 (2), 318-329, 2022 | 170 | 2022 |
| DeepCell Kiosk: scaling deep learning–enabled cellular image analysis with Kubernetes D Bannon, E Moen, M Schwartz, E Borba, T Kudo, N Greenwald, ... Nature Methods, 1-3, 2021 | 163* | 2021 |
| A single-molecule Hershey-Chase experiment D Van Valen, D Wu, YJ Chen, H Tuson, P Wiggins, R Phillips Current Biology 22 (14), 1339-1343, 2012 | 79 | 2012 |
| Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning E Moen, E Borba, G Miller, M Schwartz, D Bannon, N Koe, I Camplisson, ... Biorxiv, 803205, 2019 | 69 | 2019 |
| The multimodality cell segmentation challenge: toward universal solutions J Ma, R Xie, S Ayyadhury, C Ge, A Gupta, R Gupta, S Gu, Y Zhang, G Lee, ... Nature methods, 1-11, 2024 | 58 | 2024 |
| Biochemistry on a leash: the roles of tether length and geometry in signal integration proteins D Van Valen, M Haataja, R Phillips Biophysical journal 96 (4), 1275-1292, 2009 | 58 | 2009 |
| A spatially resolved timeline of the human maternal–fetal interface S Greenbaum, I Averbukh, E Soon, G Rizzuto, A Baranski, NF Greenwald, ... Nature 619 (7970), 595-605, 2023 | 55 | 2023 |
| Ion-dependent dynamics of DNA ejections for bacteriophage λ D Wu, D Van Valen, Q Hu, R Phillips Biophysical journal 99 (4), 1101-1109, 2010 | 35 | 2010 |
| Biomonitoring and precision health in deep space supported by artificial intelligence RT Scott, LM Sanders, EL Antonsen, JJA Hastings, S Park, G Mackintosh, ... Nature Machine Intelligence 5 (3), 196-207, 2023 | 30 | 2023 |
| Biological research and self-driving labs in deep space supported by artificial intelligence LM Sanders, RT Scott, JH Yang, AA Qutub, H Garcia Martin, DC Berrios, ... Nature Machine Intelligence 5 (3), 208-219, 2023 | 21 | 2023 |
| Multiplexed imaging of human tuberculosis granulomas uncovers immunoregulatory features conserved across tissue and blood EF McCaffrey, M Donato, L Keren, Z Chen, M Fitzpatrick, V Jojic, ... Biorxiv, 2020.06. 08.140426, 2020 | 20 | 2020 |
| A foundation model for cell segmentation U Israel, M Marks, R Dilip, Q Li, C Yu, E Laubscher, S Li, M Schwartz, ... bioRxiv, 2023.11. 17.567630, 2024 | 17 | 2024 |
| Imaging cell biology B Andrews, JB Chang, L Collinson, D Li, E Lundberg, J Mahamid, ... Nature Cell Biology 24 (8), 1180-1185, 2022 | 16 | 2022 |
| Spatiotemporal coordination at the maternal-fetal interface promotes trophoblast invasion and vascular remodeling in the first half of human pregnancy S Greenbaum, I Averbukh, E Soon, G Rizzuto, A Baranski, NF Greenwald, ... Biorxiv, 2021.09. 08.459490, 2021 | 9 | 2021 |
Erick MoenCalifornia Institute of TechnologyVerified email at caltech.edu
