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Caroline Colijn
Caroline Colijn
Simon Fraser University, Department of Mathematics
Verified email at sfu.ca
Title
Cited by
Cited by
Year
Evidence for transmission of COVID-19 prior to symptom onset
LC Tindale, JE Stockdale, M Coombe, ES Garlock, WYV Lau, M Saraswat, ...
Elife 9, e57149, 2020
444*2020
Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production
C Colijn, A Brandes, J Zucker, DS Lun, B Weiner, MR Farhat, TY Cheng, ...
PLoS computational biology 5 (8), e1000489, 2009
4052009
A mathematical model of hematopoiesis—I. Periodic chronic myelogenous leukemia
C Colijn, MC Mackey
Journal of Theoretical Biology 237 (2), 117-132, 2005
3212005
Effects of smoking and solid-fuel use on COPD, lung cancer, and tuberculosis in China: a time-based, multiple risk factor, modelling study
HH Lin, M Murray, T Cohen, C Colijn, M Ezzati
The Lancet 372 (9648), 1473-1483, 2008
3132008
Bayesian inference of infectious disease transmission from whole-genome sequence data
X Didelot, J Gardy, C Colijn
Molecular biology and evolution 31 (7), 1869-1879, 2014
2032014
Mixed-strain Mycobacterium tuberculosis infections and the implications for tuberculosis treatment and control
T Cohen, PD van Helden, D Wilson, C Colijn, MM McLaughlin, I Abubakar, ...
Clinical microbiology reviews 25 (4), 708-719, 2012
2002012
Antimicrobials: a global alliance for optimizing their rational use in intra-abdominal infections (AGORA)
M Sartelli, DG Weber, E Ruppé, M Bassetti, BJ Wright, L Ansaloni, ...
World journal of emergency surgery 11 (1), 1-32, 2016
1732016
Exogenous re-infection and the dynamics of tuberculosis epidemics: local effects in a network model of transmission
T Cohen, C Colijn, B Finklea, M Murray
Journal of the Royal Society Interface 4 (14), 523-531, 2007
1712007
Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks
X Didelot, C Fraser, J Gardy, C Colijn
Molecular biology and evolution 34 (4), 997-1007, 2017
1702017
Whole-genome sequencing for routine pathogen surveillance in public health: a population snapshot of invasive Staphylococcus aureus in Europe
DM Aanensen, EJ Feil, MTG Holden, J Dordel, CA Yeats, A Fedosejev, ...
MBio 7 (3), e00444-16, 2016
1662016
A mathematical model of hematopoiesis: II. Cyclical neutropenia
C Colijn, MC Mackey
Journal of theoretical biology 237 (2), 133-146, 2005
1582005
No coexistence for free: neutral null models for multistrain pathogens
M Lipsitch, C Colijn, T Cohen, WP Hanage, C Fraser
Epidemics 1 (1), 2-13, 2009
1492009
Interpreting whole genome sequencing for investigating tuberculosis transmission: a systematic review
HA Hatherell, C Colijn, HR Stagg, C Jackson, JR Winter, I Abubakar
BMC medicine 14 (1), 1-13, 2016
1252016
The origins and potential future of SARS-CoV-2 variants of concern in the evolving COVID-19 pandemic
SP Otto, T Day, J Arino, C Colijn, J Dushoff, M Li, S Mechai, ...
Current Biology 31 (14), R918-R929, 2021
1142021
treespace: Statistical exploration of landscapes of phylogenetic trees
T Jombart, M Kendall, J Almagro‐Garcia, C Colijn
Molecular ecology resources 17 (6), 1385-1392, 2017
1142017
Mapping phylogenetic trees to reveal distinct patterns of evolution
M Kendall, C Colijn
Molecular biology and evolution 33 (10), 2735-2743, 2016
1012016
Spontaneous emergence of multiple drug resistance in tuberculosis before and during therapy
C Colijn, T Cohen, A Ganesh, M Murray
PloS one 6 (3), e18327, 2011
932011
What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae?
C Colijn, T Cohen, C Fraser, W Hanage, E Goldstein, N Givon-Lavi, ...
Journal of The Royal Society Interface 7 (47), 905-919, 2010
902010
Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions
J Stimson, J Gardy, B Mathema, V Crudu, T Cohen, C Colijn
Molecular biology and evolution 36 (3), 587-603, 2019
872019
Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks
D Klinkenberg, JA Backer, X Didelot, C Colijn, J Wallinga
PLoS computational biology 13 (5), e1005495, 2017
842017
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