OOMMEN K MATHEW (Oommen K M) PhD
OOMMEN K MATHEW (Oommen K M) PhD
AgriGenome Labs Pvt. Ltd.
Verified email at aggenome.com
Title
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Year
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and …
M Naika, K Shameer, OK Mathew, R Gowda, R Sowdhamini
Plant and Cell Physiology 54 (2), e8-e8, 2013
1092013
Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties
AK Upadhyay, AR Chacko, A Gandhimathi, P Ghosh, K Harini, AP Joseph, ...
BMC plant biology 15 (1), 212, 2015
592015
The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins
S Kushal, K Sajesh, P., G Joseph, J Matthew, S Markus, S., W Meng, ...
Nature Genetics, 2020
192020
DOCKSCORE: a webserver for ranking protein-protein docked poses
S Malhotra, OK Mathew, R Sowdhamini
BMC bioinformatics 16 (1), 127, 2015
192015
An approach to function annotation for Proteins of Unknown Function (PUFs) in the transcriptome of Indian mulberry
KH Dhanyalakshmi, MBN Naika, RS Sajeevan, OK Mathew, KM Shafi, ...
PloS one 11 (3), e0151323, 2016
172016
PIMA : Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization
OK Mathew, R Sowdhamini
Bioinformation 12 (1), 9-11, 2016
62016
POEAS: Automated Plant Phenomic Analysis Using Plant Ontology
RS Khader Shameer, Mahantesha BN Naika, Oommen K. Mathew
Bioinformatics and Biology Insights 8, 209-214, 2014
6*2014
PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features
A Gandhimathi, P Ghosh, S Hariharaputran, OK Mathew, R Sowdhamini
Nucleic acids research 44 (D1), D410-D414, 2016
52016
PIMADb: a database of protein–protein interactions in huge macromolecular assemblies
OK Mathew, R Sowdhamini
Bioinformatics and Biology insights 10, BBI. S38416, 2016
52016
LenVarDB: database of length-variant protein domains
E Mutt, OK Mathew, R Sowdhamini
Nucleic acids research 42 (D1), D246-D250, 2014
52014
The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera)
SN Pasha, KM Shafi, AG Joshi, I Meenakshi, K Harini, J Mahita, ...
Genomics 112 (1), 621-628, 2020
42020
RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information
P Ghosh, OK Mathew, R Sowdhamini
BMC bioinformatics 17 (1), 1-8, 2016
42016
Draft Genome Sequence of Plant Growth-Promoting Endophytic Microbacterium hydrothermale BPSAC84, Isolated from the Medicinal Plant Mirabilis jalapa
AK Passari, V Rajput, LPM Priya, M Dharne, S Dastager, OK Mathew, ...
Microbiology resource announcements 8 (22), 2019
32019
Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses
AC Liu, K Patel, RD Vunikili, KW Johnson, F Abdu, SK Belman, ...
Briefings in bioinformatics 21 (4), 1182-1195, 2020
12020
PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe
P Ghosh, T Bhattacharyya, OK Mathew, R Sowdhamini
Database 2019, 2019
12019
Network Modules Driving Plant Stress Response, Tolerance and Adaptation: A case study using Abscisic acid Induced Protein-protein Interactome of Arabidopsis thaliana
K Shameer, M Naika, OK Mathew, R Sowdhamini
BioRxiv, 073247, 2016
12016
SMoS. 2: update of database of structural motifs in superfamilies
AR Chacko, OK Mathew, A Joshi, US Raghavender, R Sowdhamini
Nucleic Acids Res. doi 10, 2014
12014
A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways
AG Joshi, K Harini, I Meenakshi, KM Shafi, SN Pasha, J Mahita, ...
MethodsX, 101053, 2020
2020
Dataset for the combined transcriptome assembly of M. oleifera and functional annotation
KM Shafi, AG Joshi, I Meenakshi, SN Pasha, K Harini, J Mahita, ...
Data in Brief, 105416, 2020
2020
Draft Genome Sequence of Freshwater-Derived Streptomyces sp. Strain BPSDS2, Isolated from Damte Stream, Northeast India
AK Passari, P Deka, V Rajput, LPM Priya, M Dharne, S Dastager, ...
Microbiology resource announcements 8 (43), e00874-19, 2019
2019
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