|STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and …|
M Naika, K Shameer, OK Mathew, R Gowda, R Sowdhamini
Plant and Cell Physiology 54 (2), e8-e8, 2013
|Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties|
AK Upadhyay, AR Chacko, A Gandhimathi, P Ghosh, K Harini, AP Joseph, ...
BMC plant biology 15 (1), 212, 2015
|The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins|
S Kushal, K Sajesh, P., G Joseph, J Matthew, S Markus, S., W Meng, ...
Nature Genetics, 2020
|DOCKSCORE: a webserver for ranking protein-protein docked poses|
S Malhotra, OK Mathew, R Sowdhamini
BMC bioinformatics 16 (1), 127, 2015
|An approach to function annotation for Proteins of Unknown Function (PUFs) in the transcriptome of Indian mulberry|
KH Dhanyalakshmi, MBN Naika, RS Sajeevan, OK Mathew, KM Shafi, ...
PloS one 11 (3), e0151323, 2016
|PIMA : Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization|
OK Mathew, R Sowdhamini
Bioinformation 12 (1), 9-11, 2016
|POEAS: Automated Plant Phenomic Analysis Using Plant Ontology|
RS Khader Shameer, Mahantesha BN Naika, Oommen K. Mathew
Bioinformatics and Biology Insights 8, 209-214, 2014
|PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features|
A Gandhimathi, P Ghosh, S Hariharaputran, OK Mathew, R Sowdhamini
Nucleic acids research 44 (D1), D410-D414, 2016
|PIMADb: a database of protein–protein interactions in huge macromolecular assemblies|
OK Mathew, R Sowdhamini
Bioinformatics and Biology insights 10, BBI. S38416, 2016
|LenVarDB: database of length-variant protein domains|
E Mutt, OK Mathew, R Sowdhamini
Nucleic acids research 42 (D1), D246-D250, 2014
|The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera)|
SN Pasha, KM Shafi, AG Joshi, I Meenakshi, K Harini, J Mahita, ...
Genomics 112 (1), 621-628, 2020
|RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information|
P Ghosh, OK Mathew, R Sowdhamini
BMC bioinformatics 17 (1), 1-8, 2016
|Draft Genome Sequence of Plant Growth-Promoting Endophytic Microbacterium hydrothermale BPSAC84, Isolated from the Medicinal Plant Mirabilis jalapa|
AK Passari, V Rajput, LPM Priya, M Dharne, S Dastager, OK Mathew, ...
Microbiology resource announcements 8 (22), 2019
|Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses|
AC Liu, K Patel, RD Vunikili, KW Johnson, F Abdu, SK Belman, ...
Briefings in bioinformatics 21 (4), 1182-1195, 2020
|PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe|
P Ghosh, T Bhattacharyya, OK Mathew, R Sowdhamini
Database 2019, 2019
|Network Modules Driving Plant Stress Response, Tolerance and Adaptation: A case study using Abscisic acid Induced Protein-protein Interactome of Arabidopsis thaliana|
K Shameer, M Naika, OK Mathew, R Sowdhamini
BioRxiv, 073247, 2016
|SMoS. 2: update of database of structural motifs in superfamilies|
AR Chacko, OK Mathew, A Joshi, US Raghavender, R Sowdhamini
Nucleic Acids Res. doi 10, 2014
|A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways|
AG Joshi, K Harini, I Meenakshi, KM Shafi, SN Pasha, J Mahita, ...
MethodsX, 101053, 2020
|Dataset for the combined transcriptome assembly of M. oleifera and functional annotation|
KM Shafi, AG Joshi, I Meenakshi, SN Pasha, K Harini, J Mahita, ...
Data in Brief, 105416, 2020
|Draft Genome Sequence of Freshwater-Derived Streptomyces sp. Strain BPSDS2, Isolated from Damte Stream, Northeast India|
AK Passari, P Deka, V Rajput, LPM Priya, M Dharne, S Dastager, ...
Microbiology resource announcements 8 (43), e00874-19, 2019