Ionas Erb
Title
Cited by
Cited by
Year
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
A Vlasova, S Capella-Gutiérrez, M Rendón-Anaya, M Hernández-Oñate, ...
Genome biology 17 (1), 1-18, 2016
1482016
SwissRegulon: a database of genome-wide annotations of regulatory sites
M Pachkov, I Erb, N Molina, E Van Nimwegen
Nucleic acids research 35 (suppl_1), D127-D131, 2007
1362007
The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion
A Taddei, G Van Houwe, S Nagai, I Erb, E van Nimwegen, SM Gasser
Genome research 19 (4), 611-625, 2009
1282009
Understanding sequencing data as compositions: an outlook and review
TP Quinn, I Erb, MF Richardson, TM Crowley
Bioinformatics 34 (16), 2870-2878, 2018
1242018
Multiple sequence alignment modeling: methods and applications
M Chatzou, C Magis, JM Chang, C Kemena, G Bussotti, I Erb, ...
Briefings in bioinformatics 17 (6), 1009-1023, 2016
1112016
Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures
JF Taly, C Magis, G Bussotti, JM Chang, P Di Tommaso, I Erb, ...
Nature Protocols 6 (11), 1669-1682, 2011
1022011
Alignathon: a competitive assessment of whole-genome alignment methods
D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ...
Genome research 24 (12), 2077-2089, 2014
942014
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ...
Genome biology 17 (1), 1-19, 2016
912016
MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences
P Arnold, I Erb, M Pachkov, N Molina, E van Nimwegen
Bioinformatics 28 (4), 487-494, 2012
802012
Third report on chicken genes and chromosomes 2015
M Schmid, J Smith, DW Burt, BL Aken, PB Antin, AL Archibald, C Ashwell, ...
Cytogenetic and genome research 145 (2), 78-179, 2015
712015
How should we measure proportionality on relative gene expression data?
I Erb, C Notredame
Theory in Biosciences 135 (1), 21-36, 2016
612016
A field guide for the compositional analysis of any-omics data
TP Quinn, I Erb, G Gloor, C Notredame, MF Richardson, TM Crowley
GigaScience 8 (9), giz107, 2019
602019
T-Coffee: tree-based consistency objective function for alignment evaluation
C Magis, JF Taly, G Bussotti, JM Chang, P Di Tommaso, I Erb, ...
Multiple Sequence Alignment Methods, 117-129, 2014
572014
Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and …
U Schlecht, I Erb, P Demougin, N Robine, V Borde, E Nimwegen, ...
Molecular biology of the cell 19 (5), 2193-2207, 2008
412008
Transcription factor binding site positioning in yeast: proximal promoter motifs characterize TATA-less promoters
I Erb, E Van Nimwegen
PLoS One 6 (9), e24279, 2011
362011
Principal component analysis of the effects of environmental enrichment and (-)-epigallocatechin-3-gallate on age-associated learning deficits in a mouse model of Down syndrome
S Catuara-Solarz, J Espinosa-Carrasco, I Erb, K Langohr, C Notredame, ...
Frontiers in behavioral neuroscience 9, 330, 2015
322015
BlastR—fast and accurate database searches for non-coding RNAs
G Bussotti, E Raineri, I Erb, M Zytnicki, A Wilm, E Beaudoing, P Bucher, ...
Nucleic acids research 39 (16), 6886-6895, 2011
322011
Multi-information in the thermodynamic limit
I Erb, N Ay
Journal of Statistical Physics 115 (3), 949-976, 2004
302004
Combined treatment With environmental enrichment And (-)-epigallocatechin-3-gallate ameliorates learning deficits And hippocampal alterations In A mouse model Of Down syndrome
S Catuara-Solarz, J Espinosa-Carrasco, I Erb, K Langohr, JR Gonzalez, ...
eneuro 3 (5), 2016
242016
Use of ChIP-Seq data for the design of a multiple promoter-alignment method
I Erb, JR Gonzalez-Vallinas, G Bussotti, E Blanco, E Eyras, C Notredame
Nucleic acids research 40 (7), e52-e52, 2012
222012
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