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Hidden Markov models in computational biology: Applications to protein modeling A Krogh, M Brown, IS Mian, K Sjölander, D Haussler Journal of molecular biology 235 (5), 1501-1531, 1994 | 2856 | 1994 |
The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions T Kleffmann, D Russenberger, A von Zychlinski, W Christopher, ... Current Biology 14 (5), 354-362, 2004 | 713 | 2004 |
Stochastic context-free grammers for tRNA modeling Y Sakakibara, M Brown, R Hughey, IS Mian, K Sjölander, RC Underwood, ... Nucleic acids research 22 (23), 5112-5120, 1994 | 564 | 1994 |
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology K Sjölander, K Karplus, M Brown, R Hughey, A Krogh, IS Mian, ... Bioinformatics 12 (4), 327-345, 1996 | 481 | 1996 |
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From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants E Magnani, K Sjölander, S Hake The Plant Cell 16 (9), 2265-2277, 2004 | 347 | 2004 |
Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis LK Fritz-Laylin, N Krishnamurthy, M Tör, KV Sjölander, JDG Jones Plant physiology 138 (2), 611-623, 2005 | 301 | 2005 |
Using Dirichlet mixture priors to derive hidden Markov models for protein families. M Brown, R Hughey, A Krogh, IS Mian, K Sjölander, D Haussler Ismb 1, 47-55, 1993 | 271 | 1993 |
Phylogenomic inference of protein molecular function: advances and challenges K Sjölander Bioinformatics 20 (2), 170-179, 2004 | 268 | 2004 |
The interface of protein structure, protein biophysics, and molecular evolution DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ... Protein Science 21 (6), 769-785, 2012 | 243 | 2012 |
Functional Analysis of Avr9/Cf-9 Rapidly Elicited Genes Identifies a Protein Kinase, ACIK1, That Is Essential for Full Cf-9–Dependent Disease Resistance in Tomato O Rowland, AA Ludwig, CJ Merrick, F Baillieul, FE Tracy, WE Durrant, ... The Plant Cell 17 (1), 295-310, 2005 | 242 | 2005 |
Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016 | 239 | 2016 |
Predicting protein structure using hidden Markov models K Karplus, K Sjölander, C Barrett, M Cline, D Haussler, R Hughey, L Holm, ... Proteins: Structure, Function, and Bioinformatics 29 (S1), 134-139, 1997 | 229 | 1997 |
Molecular characterization of proteolytic cleavage sites of the Pseudomonas syringae effector AvrRpt2 ST Chisholm, D Dahlbeck, N Krishnamurthy, B Day, K Sjolander, ... Proceedings of the National Academy of Sciences 102 (6), 2087-2092, 2005 | 204 | 2005 |
Protein modeling using hidden Markov models: Analysis of globins D Haussler, A Krogh, IS Mian, K Sjolander [1993] Proceedings of the Twenty-sixth Hawaii International Conference on …, 1993 | 178 | 1993 |
A comparison of scoring functions for protein sequence profile alignment RC Edgar, K Sjölander Bioinformatics 20 (8), 1301-1308, 2004 | 151 | 2004 |
Distribution and properties of the genes encoding the biosynthesis of the bacterial cofactor, pyrroloquinoline quinone YQ Shen, F Bonnot, EM Imsand, JM RoseFigura, K Sjölander, ... Biochemistry 51 (11), 2265-2275, 2012 | 150 | 2012 |
Automated protein subfamily identification and classification DP Brown, N Krishnamurthy, K Sjölander PLoS computational biology 3 (8), e160, 2007 | 137 | 2007 |
Proteome Analysis of the Rice Etioplast: Metabolic and Regulatory Networks and Novel Protein Functions* S A von Zychlinski, T Kleffmann, N Krishnamurthy, K Sjölander, S Baginsky, ... Molecular & Cellular Proteomics 4 (8), 1072-1084, 2005 | 135 | 2005 |