Cécile Pereira
Cécile Pereira
TotalEnergies, France
Verified email at totalenergies.com
Title
Cited by
Cited by
Year
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425-430, 2016
1732016
SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
M Tardaguila, L De La Fuente, C Marti, C Pereira, FJ Pardo-Palacios, ...
Genome research 28 (3), 396-411, 2018
1262018
GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text
Q Zhu, X Li, A Conesa, C Pereira
Bioinformatics 34 (9), 1547-1554, 2018
842018
Advances and Applications in the Quest for Orthologs
N Glover, C Dessimoz, I Ebersberger, SK Forslund, T Gabaldón, ...
Molecular biology and evolution 36 (10), 2157-2164, 2019
472019
Gearing up to handle the mosaic nature of life in the quest for orthologs
K Forslund, C Pereira, S Capella-Gutierrez, AS da Silva, A Altenhoff, ...
Bioinformatics 34 (2), 323-329, 2018
282018
Comparative metagenomics provides insight into the ecosystem functioning of the Shark Bay Stromatolites, Western Australia
J Babilonia, A Conesa, G Casaburi, C Pereira, AS Louyakis, RP Reid, ...
Frontiers in microbiology 9, 1359, 2018
242018
A meta-approach for improving the prediction and the functional annotation of ortholog groups
C Pereira, A Denise, O Lespinet
BMC genomics 15 (6), 1-8, 2014
192014
Quest for Orthologs consortium, Toni Gabaldón, Suzanna E Lewis, Paul D Thomas, Erik Sonnhammer, and Christophe Dessimoz. Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature Methods 13, 425-430, 2016
82016
Assessment of unconventional antimicrobial compounds for the control of ‘Candidatus Liberibacter asiaticus’, the causative agent of citrus greening disease
CL Gardner, DR da Silva, FA Pagliai, L Pan, KA Padgett-Pagliai, ...
Scientific reports 10 (1), 1-15, 2020
72020
STRASS: A Light and Effective Method for Extractive Summarization Based on Sentence Embeddings
L Bouscarrat, A Bonnefoy, T Peel, C Pereira
ACL student workshop, 2019
62019
Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
M Tardaguila, L De La Fuente, C Marti, C Pereira, FJ Pardo-Palacios, ...
Genome research 28 (7), 1096, 2018
42018
Padhoc: a computational pipeline for pathway reconstruction on the fly
S Casani-Galdon, C Pereira, A Conesa
Bioinformatics 36 (Supplement_2), i795–i803, 2020
2020
Plant metabolic pathway extraction from text
C Pereira, A Conesa
F1000Research 6, 2017
2017
FAIR: Functional Analysis at Isoform Resolution by using long read technologies
L de la Fuente, M Tardaguila, H del Risco, C Martí, C Pereira, ...
F1000Research 5, 2016
2016
A new method for improving the prediction and the functional annotation of ortholog groups
C Pereira, A Denise, O Lespinet
Proc. ECCB'14, the 13th European Conference on Computational Biology, 2014
2014
Comparative analysis of phylogenetic profiles for the enzymatic characterization of fungal group
C Pereira, J Azé, A Denise, C Drevet, C Froidevaux, P Silar, O Lespinet
Actes des Journées Ouvertes de Biologie Informatique et Mathématiques-JOBIM'13, 2013
2013
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