| Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality DF Simola, L Wissler, G Donahue, RM Waterhouse, M Helmkampf, ... Genome research 23 (8), 1235-1247, 2013 | 255 | 2013 |
| Epigenetic (re) programming of caste-specific behavior in the ant Camponotus floridanus DF Simola, RJ Graham, CM Brady, BL Enzmann, C Desplan, A Ray, ... Science 351 (6268), aac6633, 2016 | 227 | 2016 |
| Eusocial insects as emerging models for behavioural epigenetics H Yan, DF Simola, R Bonasio, J Liebig, SL Berger, D Reinberg Nature Reviews Genetics 15 (10), 677-688, 2014 | 190 | 2014 |
| DNA methylation in social insects: how epigenetics can control behavior and longevity H Yan, R Bonasio, DF Simola, J Liebig, SL Berger, D Reinberg Annual Review of Entomology 60, 435-452, 2015 | 165 | 2015 |
| A chromatin link to caste identity in the carpenter ant Camponotus floridanus DF Simola, C Ye, NS Mutti, K Dolezal, R Bonasio, J Liebig, D Reinberg, ... Genome Research 23 (3), 486-496, 2013 | 153 | 2013 |
| Mechanisms and dynamics of orphan gene emergence in insect genomes L Wissler, J Gadau, DF Simola, M Helmkampf, E Bornberg-Bauer Genome biology and evolution 5 (2), 439-455, 2013 | 149 | 2013 |
| MLL1 is essential for the senescence-associated secretory phenotype BC Capell, AM Drake, J Zhu, PP Shah, Z Dou, J Dorsey, DF Simola, ... Genes & development 30 (3), 321-336, 2016 | 144 | 2016 |
| The genomic impact of 100 million years of social evolution in seven ant species J Gadau, M Helmkampf, S Nygaard, J Roux, DF Simola, CR Smith, ... Trends in Genetics 28 (1), 14-21, 2012 | 128 | 2012 |
| Sphingolipids, Transcription Factors, and Conserved Toolkit Genes: Developmental Plasticity in the Ant Cardiocondyla obscurior L Schrader, DF Simola, J Heinze, J Oettler Molecular Biology and Evolution 32 (6), 1474-1486, 2015 | 46 | 2015 |
| Sniper: improved SNP discovery by multiply mapping deep sequenced reads DF Simola, J Kim Genome biology 12, 1-20, 2011 | 42 | 2011 |
| Systematic analysis of drug targets confirms expression in disease-relevant tissues V Kumar, P Sanseau, DF Simola, MR Hurle, P Agarwal Scientific reports 6 (1), 36205, 2016 | 29 | 2016 |
| Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces paradoxus A Vishnoi, P Sethupathy, D Simola, JB Plotkin, S Hannenhalli Molecular biology and evolution 28 (9), 2615-2627, 2011 | 21 | 2011 |
| BRD4 bimodal binding at promoters and drug-induced displacement at Pol II pause sites associates with I-BET sensitivity P Khoueiry, A Ward Gahlawat, M Petretich, AM Michon, D Simola, E Lam, ... Epigenetics & Chromatin 12, 1-18, 2019 | 20 | 2019 |
| Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes DF Simola, C Francis, PD Sniegowski, J Kim Genome biology 11, 1-17, 2010 | 16 | 2010 |
| Expanding bromodomain targeting into neglected parasitic diseases C Tallant, P Bamborough, C Chung, FJ Gamo, R Kirkpatrick, C Larminie, ... ACS Infectious Diseases 7 (11), 2953-2958, 2021 | 12 | 2021 |
| Epigenetic programming of caste-specific division of labor in the ant Camponotus floridanus RJ Graham, DF Simola, CM Brady, BL Enzmann, C Desplan, A Ray, ... 2016 International Congress of Entomology, 2016 | | 2016 |
| Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality BJ Parker, DF Simola, L Wissler, G Donahue, RM Waterhouse, ... Cold Spring Harbor Laboratory Press, 2013 | | 2013 |
| Social insect genomes exhibit dramatic evolution in gene DF Simola, L Wissler, G Donahue | | 2013 |
| Evolution of genome-wide gene regulation in the budding yeast cell-division cycle DF Simola University of Pennsylvania, 2009 | | 2009 |
| Patterns of Dendritic Translational Hotspots DF Simola | | 2005 |
