Clément - Marie Train
Clément - Marie Train
PhD student, UNIL Lausannne
Verified email at
Cited by
Cited by
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ...
Nucleic acids research 43 (D1), D240-D249, 2015
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ...
Nucleic acids research 46 (D1), D477-D485, 2018
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425-430, 2016
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more
AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ...
Nucleic acids research 49 (D1), D373-D379, 2021
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference
CM Train, NM Glover, GH Gonnet, AM Altenhoff, C Dessimoz
Bioinformatics 33 (14), i75-i82, 2017
iHam and pyHam: visualizing and processing hierarchical orthologous groups
CM Train, M Pignatelli, A Altenhoff, C Dessimoz
Bioinformatics 35 (14), 2504-2506, 2019
Quest for Orthologs consortium, Toni Gabaldón, Suzanna E Lewis, Paul D Thomas, Erik Sonnhammer, and Christophe Dessimoz. Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature Methods 13, 425-430, 2016
New genome assembly of the barn owl (Tyto alba alba)
AL Ducrest, S Neuenschwander, E Schmid‐Siegert, M Pagni, C Train, ...
Ecology and evolution 10 (5), 2284-2298, 2020
Taxon sampling unequally affects individual nodes in a phylogenetic tree: consequences for model gene tree construction in SwissTree
B Boeckmann, D Dylus, S Moretti, A Altenhoff, CM Train, E Kriventseva, ...
biorxiv, 181966, 2017
Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome
I Piližota, CM Train, A Altenhoff, H Redestig, C Dessimoz
Bioinformatics 35 (7), 1159-1166, 2019
Multifaceted quality assessment of gene repertoire annotation with OMArk
Y Nevers, V Rossier, C Train, AM Altenhoff, C Dessimoz, N Glover
bioRxiv, 2022.11. 25.517970, 2022
Matreex: compact and interactive visualisation of large gene families provides evidence for loss of intraflagellar transport in a myxozoan
V Rossier, C Train, Y Nevers, M Robinson-Rechavi, C Dessimoz
bioRxiv, 2023.02. 18.529053, 2023
Inferring Hierarchical Orthologous Groups
C Train
éditeur non identifié, 2019
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