Luyi Tian
Luyi Tian
Guangzhou Laboratory
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RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR
CW Law, M Alhamdoosh, S Su, X Dong, L Tian, GK Smyth, ME Ritchie
F1000Research 5, 2016
Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments
L Tian, X Dong, S Freytag, KA Lę Cao, S Su, A JalalAbadi, ...
Nature methods 16 (6), 479-487, 2019
Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data
S Freytag, L Tian, I Lönnstedt, M Ng, M Bahlo
F1000Research 7, 2018
Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia
CC Bell, KA Fennell, YC Chan, F Rambow, MM Yeung, D Vassiliadis, ...
Nature communications 10 (1), 2723, 2019
The expanding vistas of spatial transcriptomics
L Tian, F Chen, EZ Macosko
Nature Biotechnology 41 (6), 773-782, 2023
Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing
L Tian, JS Jabbari, R Thijssen, Q Gouil, SL Amarasinghe, O Voogd, ...
Genome biology 22, 1-24, 2021
scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data
L Tian, S Su, X Dong, D Amann-Zalcenstein, C Biben, A Seidi, DJ Hilton, ...
PLoS computational biology 14 (8), e1006361, 2018
Interconversion between tumorigenic and differentiated states in acute myeloid leukemia
MD McKenzie, M Ghisi, EP Oxley, S Ngo, L Cimmino, C Esnault, R Liu, ...
Cell stem cell 25 (2), 258-272. e9, 2019
Easy and efficient ensemble gene set testing with EGSEA
M Alhamdoosh, CW Law, L Tian, JM Sheridan, M Ng, ME Ritchie
F1000Research 6, 2017
Transcriptional profiling of individual airway projecting vagal sensory neurons
SB Mazzone, L Tian, AAK Moe, MW Trewella, ME Ritchie, AE McGovern
Molecular Neurobiology 57 (2), 949-963, 2020
Benchmarking UMI-based single-cell RNA-seq preprocessing workflows
Y You, L Tian, S Su, X Dong, JS Jabbari, PF Hickey, ME Ritchie
Genome biology 22 (1), 339, 2021
Single-cell multiomics reveal the scale of multilayered adaptations enabling CLL relapse during venetoclax therapy
R Thijssen, L Tian, MA Anderson, C Flensburg, A Jarratt, AL Garnham, ...
Blood, The Journal of the American Society of Hematology 140 (20), 2127-2141, 2022
Single-cell immune profiling reveals distinct immune response in asymptomatic COVID-19 patients
XN Zhao, Y You, XM Cui, HX Gao, GL Wang, SB Zhang, L Yao, LJ Duan, ...
Signal transduction and targeted therapy 6 (1), 342, 2021
Clonal multi-omics reveals Bcor as a negative regulator of emergency dendritic cell development
L Tian, S Tomei, J Schreuder, TS Weber, ...
Immunity, 2021
The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read differential expression analysis tools
X Dong, L Tian, Q Gouil, H Kariyawasam, S Su, R De Paoli-Iseppi, ...
NAR genomics and bioinformatics 3 (2), lqab028, 2021
Single-cell analyses reveal the clonal and molecular aetiology of Flt3L-induced emergency dendritic cell development
DS Lin, L Tian, S Tomei, D Amann-Zalcenstein, TM Baldwin, TS Weber, ...
Nature Cell Biology 23 (3), 219-231, 2021
Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures
X Dong, MRM Du, Q Gouil, L Tian, JS Jabbari, R Bowden, PL Baldoni, ...
Nature Methods 20 (11), 1810-1821, 2023
A new lymphoid-primed progenitor marked by Dach1 downregulation identified with single cell multi-omics
Nature Immunology, 2020
CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods
S Su, L Tian, X Dong, PF Hickey, S Freytag, ME Ritchie
Bioinformatics 36 (7), 2288-2290, 2020
Slide-tags enables single-nucleus barcoding for multimodal spatial genomics
AJC Russell, JA Weir, NM Nadaf, M Shabet, V Kumar, S Kambhampati, ...
Nature 625 (7993), 101-109, 2024
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