| The effects of death and post-mortem cold ischemia on human tissue transcriptomes PG Ferreira, M Muñoz-Aguirre, F Reverter, CP Sa Godinho, A Sousa, ... Nature communications 9 (1), 490, 2018 | 191 | 2018 |
| Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses A Dugourd, C Kuppe, M Sciacovelli, E Gjerga, A Gabor, KB Emdal, ... Molecular systems biology 17 (1), e9730, 2021 | 64 | 2021 |
| Multi-omics characterization of interaction-mediated control of human protein abundance levels A Sousa, E Gonçalves, B Mirauta, D Ochoa, O Stegle, P Beltrao Molecular & Cellular Proteomics 18 (8), S114-S125, 2019 | 16 | 2019 |
| CDH1 somatic alterations in Mexican patients with diffuse and mixed sporadic gastric cancer AR Bustos-Carpinteyro, C Oliveira, A Sousa, P Oliveira, H Pinheiro, ... BMC cancer 19 (1), 1-9, 2019 | 14 | 2019 |
| Gene expression analyses in non muscle invasive bladder cancer reveals a role for alternative splicing and Tp53 status M Dueñas, A Pérez-Figueroa, C Oliveira, C Suárez-Cabrera, A Sousa, ... Scientific Reports 9 (1), 1-11, 2019 | 13 | 2019 |
| PHONEMeS: efficient modeling of signaling networks derived from large-scale mass spectrometry data E Gjerga, A Dugourd, L Tobalina, A Sousa, J Saez-Rodriguez Journal of Proteome Research 20 (4), 2138-2144, 2021 | 10 | 2021 |
| The effects of death and post-mortem cold ischemia on human tissue transcriptomes. Nat Commun 9: 490 PG Ferreira, M Munoz-Aguirre, F Reverter, CP Sá Godinho, A Sousa, ... | 7 | 2018 |
| Gender differential transcriptome in gastric and thyroid cancers A Sousa, M Ferreira, C Oliveira, PG Ferreira Frontiers in Genetics 11, 808, 2020 | 5 | 2020 |
| Predicting Gastric Cancer Molecular Subtypes from Gene Expression Data M Moreno, A Sousa, M Melé, R Oliveira, PG Ferreira Proceedings 54 (1), 59, 2020 | 2 | 2020 |
| Pan-Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival A Sousa, A Dugourd, D Memon, B Petursson, E Petsalaki, ... bioRxiv, 2021.06. 09.447741, 2021 | 1 | 2021 |
| R-seqQI: RNA-Seq Quality Indicator AEF Sousa | | 2016 |
