Bas E. Dutilh
Bas E. Dutilh
Theoretical Biology and Bioinformatics, Utrecht University
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Nitrite-driven anaerobic methane oxidation by oxygenic bacteria
KF Ettwig, MK Butler, D Le Paslier, E Pelletier, S Mangenot, ...
Nature 464 (7288), 543-548, 2010
1194*2010
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
M Strous, E Pelletier, S Mangenot, T Rattei, A Lehner, MW Taylor, M Horn, ...
Nature 440 (7085), 790-794, 2006
1017*2006
Metagenomics and future perspectives in virus discovery
JL Mokili, F Rohwer, BE Dutilh
Current Opinion in Virology 2 (1), 63-77, 2012
4432012
Towards the human colorectal cancer microbiome
JR Marchesi, BE Dutilh, N Hall, WH Peters, R Roelofs, A Boleij, H Tjalsma
PLoS One 6 (5), e20447, 2011
4332011
A bacterial driver–passenger model for colorectal cancer: beyond the usual suspects
H Tjalsma, A Boleij, JR Marchesi, BE Dutilh
Nature Reviews Microbiology 10 (8), 575-582, 2012
4312012
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ...
Nature Communications 5, 2014
3242014
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
S Roux, JR Brum, BE Dutilh, S Sunagawa, MB Duhaime, A Loy, ...
Nature 537 (7622), 689-693, 2016
2622016
The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
J van de Vossenberg, D Woebken, WJ Maalcke, HJCT Wessels, BE Dutilh, ...
Environmental Microbiology 15 (5), 1275-1289, 2013
212*2013
Genome trees and the nature of genome evolution
B Snel, MA Huynen, BE Dutilh
Annual Review of Microbiology 59, 191-209, 2005
2012005
Computational approaches to predict bacteriophage–host relationships
RA Edwards, K McNair, K Faust, J Raes, BE Dutilh
FEMS microbiology reviews 40 (2), 258-272, 2016
1512016
Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 SHFM1 locus
EN Kouwenhoven, SJ Van Heeringen, JJ Tena, M Oti, BE Dutilh, ...
PLoS Genetics 6 (8), e1001065-e1001065, 2010
1472010
Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system
DR Speth, MH in ’t Zandt, S Guerrero-Cruz, BE Dutilh, MSM Jetten
Nature communications 7, 11172, 2016
1402016
Discovery of a HapE mutation that causes azole resistance in Aspergillus fumigatus through whole genome sequencing and sexual crossing
SMT Camps, BE Dutilh, MC Arendrup, AJMM Rijs, E Snelders, ...
PLoS One 7 (11), e50034, 2012
1372012
Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment
G Ricard, NR McEwan, BE Dutilh, JP Jouany, D Macheboeuf, M Mitsumori, ...
BMC Genomics 7 (1), 22, 2006
1362006
Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.)
MAHJ van Kessel, BE Dutilh, K Neveling, MP Kwint, JA Veltman, G Flik, ...
Amb Express 1 (1), 41, 2011
1282011
Computational pan-genomics: status, promises and challenges
Briefings in Bioinformatics 19 (1), 118–135, 2018
1152018
Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018)
AMQ King, EJ Lefkowitz, AR Mushegian, MJ Adams, BE Dutilh, ...
Archives of virology 163 (9), 2601-2631, 2018
1062018
Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution
PR Kensche, V van Noort, BE Dutilh, MA Huynen
Journal of the Royal Society Interface 5 (19), 151-170, 2008
912008
Microbial taxonomy in the post-genomic era: Rebuilding from scratch?
CC Thompson, GR Amaral, M Campeão, RA Edwards, MF Polz, BE Dutilh, ...
Archives of Microbiology 197 (3), 359-370, 2015
822015
The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise
BE Dutilh, MA Huynen, WJ Bruno, B Snel
Journal of Molecular Evolution 58 (5), 527-539, 2004
782004
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