John Quackenbush

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	All	Since 2015
Citations	77548	24643
h-index	98	58
i10-index	285	207

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Co-authors

Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkVerified email at uhnresearch.ca
Joseph A. WhiteDana-Farber Cancer InstituteVerified email at jimmy.harvard.edu
Hugo AertsDirector AIM @ Harvard-BWH; DFCI; MGHVerified email at dfci.harvard.edu
Razvan SultanaComputational Biologist, Univ. of Hawai'iVerified email at hawaii.edu
Aedin CulhaneDept of Data Sciences, Dana-Farber Cancer Institute/ Dept of Biostatistics, Harvard TH Chan SchoolVerified email at jimmy.harvard.edu
Alvis BrazmaSenior Scientist, European Bioinformatics Institute, EMBLVerified email at ebi.ac.uk
Christian StoeckertReseach Professor of Genetics, University of PennsylvaniaVerified email at upenn.edu
Kimberly GlassAssociate Scientist, Brigham and Women's Hospital & Assistant Professor, Harvard Medical SchoolVerified email at channing.harvard.edu
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentVerified email at jhu.edu
Helen CaustonColumbia UniversityVerified email at cumc.columbia.edu
Helen ParkinsonEuropean Bioinformatics Institute - Head of Molecular Archives, Team LeaderVerified email at ebi.ac.uk
Paul SpellmanOregon Health and Sciences UniversityVerified email at ohsu.edu
Ronald TaylorSupervisory Biologist (Bioinformatics) at the National Cancer InstituteVerified email at nih.gov
Gavin SherlockAssociate Professor of Genetics, Stanford UniversityVerified email at stanford.edu
Pascal HingampAssociate Professor, Aix Marseille University, FranceVerified email at univ-amu.fr
Eleanor A HoweDiamond Age Data ScienceVerified email at diamondagedatascience.com
Maria I KlapaPrincipal Researcher at FORTH/ICE-HTVerified email at iceht.forth.gr
Gianluca BontempiFull professor of Machine Learning, ULBVerified email at ulb.ac.be
Ed SilvermanVerified email at channing.harvard.edu
David A. SchwartzProfessor of Medicine and Immunology, University of ColoradoVerified email at ucdenver.edu

John Quackenbush

Harvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-Farber

Verified email at hsph.harvard.edu

Genomics Bioinformatics Computational Biology Functional Genomics Cancer Genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana S Kaul, HL Koo, J Jenkins, M Rizzo, T Rooney, LJ Tallon, T Feldblyum, ... nature 408 (6814), 796-815, 2000	9494	2000
TM4: a free, open-source system for microarray data management and analysis AI Saeed, V Sharov, J White, J Li, W Liang, N Bhagabati, J Braisted, ... Biotechniques 34 (2), 374-378, 2003	4870	2003
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ... Nature genetics 29 (4), 365-371, 2001	4481	2001
The complete genome sequence of the gastric pathogen Helicobacter pylori JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, ... Nature 388 (6642), 539-547, 1997	3994	1997
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	3443	2005
Microarray data normalization and transformation J Quackenbush Nature genetics 32 (4), 496-501, 2002	2514	2002
Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach HJWL Aerts, ER Velazquez, RTH Leijenaar, C Parmar, P Grossmann, ... Nature communications 5 (1), 1-9, 2014	2362	2014
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi CM Fraser, S Casjens, WM Huang, GG Sutton, R Clayton, R Lathigra, ... Nature 390 (6660), 580-586, 1997	2318	1997
Computational analysis of microarray data J Quackenbush Nature reviews genetics 2 (6), 418-427, 2001	2046	2001
Genesis: cluster analysis of microarray data A Sturn, J Quackenbush, Z Trajanoski Bioinformatics 18 (1), 207-208, 2002	1817	2002
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ... Nature 420 (6915), 563-573, 2002	1748	2002
[9] TM4 microarray software suite AI Saeed, NK Bhagabati, JC Braisted, W Liang, V Sharov, EA Howe, J Li, ... Methods in enzymology 411, 134-193, 2006	1692	2006
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets G Pertea, X Huang, F Liang, V Antonescu, R Sultana, S Karamycheva, ... Bioinformatics 19 (5), 651-652, 2003	1618	2003
The molecular portraits of breast tumors are conserved across microarray platforms Z Hu, C Fan, DS Oh, JS Marron, X He, BF Qaqish, C Livasy, LA Carey, ... BMC genomics 7 (1), 1-12, 2006	1598	2006
Corrections: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus HP Klenk, RA Clayton, JF Tomb, O White, KE Nelson, KA Ketchum, ... Nature 394 (6688), 101, 1998	1596*	1998
Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors JI Herschkowitz, K Simin, VJ Weigman, I Mikaelian, J Usary, Z Hu, ... Genome biology 8 (5), R76, 2007	1334	2007
A concise guide to cDNA microarray analysis P Hegde, R Qi, K Abernathy, C Gay, S Dharap, R Gaspard, JE Hughes, ... Biotechniques 29 (3), 548-562, 2000	1329	2000
A gene map of the human genome GD Schuler, MS Boguski, EA Stewart, LD Stein, G Gyapay, K Rice, ... Science 274 (5287), 540-546, 1996	1271	1996
Multiple-laboratory comparison of microarray platforms RA Irizarry, D Warren, F Spencer, IF Kim, S Biswal, BC Frank, ... Nature methods 2 (5), 345-350, 2005	990	2005
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii JM Carlton, SV Angiuoli, BB Suh, TW Kooij, M Pertea, JC Silva, ... Nature 419 (6906), 512-519, 2002	836	2002

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