|Network-based stratification of tumor mutations|
M Hofree, JP Shen, H Carter, A Gross, T Ideker
Nature methods 10 (11), 1108-1115, 2013
|Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor|
JM Gendron, JL Pruneda-Paz, CJ Doherty, AM Gross, SE Kang, SA Kay
Proceedings of the National Academy of Sciences 109 (8), 3167-3172, 2012
|Methylome-wide analysis of chronic HIV infection reveals five-year increase in biological age and epigenetic targeting of HLA|
AM Gross, PA Jaeger, JF Kreisberg, K Licon, KL Jepsen, M Khosroheidari, ...
Molecular cell 62 (2), 157-168, 2016
|Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment|
T Wang, B Tsui, JF Kreisberg, NA Robertson, AM Gross, MK Yu, H Carter, ...
Genome biology 18, 1-11, 2017
|A network of conserved synthetic lethal interactions for exploration of precision cancer therapy|
R Srivas, JP Shen, CC Yang, SM Sun, J Li, AM Gross, J Jensen, K Licon, ...
Molecular cell 63 (3), 514-525, 2016
|Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss|
AM Gross, RK Orosco, JP Shen, AM Egloff, H Carter, M Hofree, ...
Nature genetics 46 (9), 939-943, 2014
|Interaction landscape of inherited polymorphisms with somatic events in cancer|
H Carter, R Marty, M Hofree, AM Gross, J Jensen, KM Fisch, X Wu, ...
Cancer discovery 7 (4), 410-423, 2017
|ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions|
E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ...
Bioinformatics 35 (22), 4754-4756, 2019
|Copy-number variants in clinical genome sequencing: deployment and interpretation for rare and undiagnosed disease|
AM Gross, SS Ajay, V Rajan, C Brown, K Bluske, NJ Burns, A Chawla, ...
Genetics in Medicine 21 (5), 1121-1130, 2019
|ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data|
E Dolzhenko, MF Bennett, PA Richmond, B Trost, S Chen, JJFA van Vugt, ...
Genome biology 21, 1-14, 2020
|Multiple routes to oncogenesis are promoted by the human papillomavirus–host protein network|
M Eckhardt, W Zhang, AM Gross, J Von Dollen, JR Johnson, ...
Cancer discovery 8 (11), 1474-1489, 2018
|Clinical whole genome sequencing as a first-tier test at a resource-limited dysmorphology clinic in Mexico|
A Scocchia, KM Wigby, D Masser-Frye, M Del Campo, CI Galarreta, ...
NPJ genomic medicine 4 (1), 5, 2019
|Analysis of matched tumor and normal profiles reveals common transcriptional and epigenetic signals shared across cancer types|
AM Gross, JF Kreisberg, T Ideker
PloS one 10 (11), e0142618, 2015
|ERCC1 and TS expression as prognostic and predictive biomarkers in metastatic colon cancer|
MB Choueiri, JP Shen, AM Gross, JK Huang, T Ideker, P Fanta
PloS one 10 (6), e0126898, 2015
|Matrix-Metalloproteinases in Head and Neck Carcinoma–Cancer Genome Atlas Analysis and Fluorescence Imaging in Mice|
SJ Hauff, SC Raju, RK Orosco, AM Gross, JA Diaz-Perez, E Savariar, ...
Otolaryngology–Head and Neck Surgery 151 (4), 612-618, 2014
|Combined TP53 mutation/3p loss correlates with decreased radiosensitivity and increased matrix-metalloproteinase activity in head and neck carcinoma|
SC Raju, SJ Hauff, AJ Lemieux, RK Orosco, AM Gross, LT Nguyen, ...
Oral oncology 51 (5), 470-475, 2015
|Molecular networks in context|
AM Gross, T Ideker
Nature biotechnology 33 (7), 720-721, 2015
|Genome sequencing in persistently unsolved white matter disorders|
G Helman, BR Lajoie, J Crawford, A Takanohashi, M Walkiewicz, ...
Annals of Clinical and Translational Neurology 7 (1), 144-152, 2020
|Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA|
C Muralidhara, AM Gross, RR Gutell, O Alter
PloS one 6 (4), e18768, 2011
|Chemogenetic profiling identifies RAD17 as synthetically lethal with checkpoint kinase inhibition|
JP Shen, R Srivas, A Gross, J Li, EJ Jaehnig, SM Sun, ...
Oncotarget 6 (34), 35755, 2015