Raheleh Salari
Raheleh Salari
Natera Inc
Verified email at natera.com
Title
Cited by
Cited by
Year
Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution
C Abbosh, NJ Birkbak, GA Wilson, M Jamal-Hanjani, T Constantin, ...
Nature 545 (7655), 446-451, 2017
6702017
Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation
MR Green, S Kihira, CL Liu, RV Nair, R Salari, AJ Gentles, J Irish, H Stehr, ...
Proceedings of the National Academy of Sciences 112 (10), E1116-E1125, 2015
2032015
Fast and scalable inference of multi-sample cancer lineages
V Popic, R Salari, I Hajirasouliha, D Kashef-Haghighi, RB West, ...
Genome biology 16 (1), 91, 2015
1432015
Detection of ubiquitous and heterogeneous mutations in cell-free DNA from patients with early-stage non-small-cell lung cancer
M Jamal-Hanjani, GA Wilson, S Horswell, R Mitter, O Sakarya, ...
Annals of Oncology 27 (5), 862-867, 2016
1372016
A partition function algorithm for interacting nucleic acid strands
H Chitsaz, R Salari, SC Sahinalp, R Backofen
Bioinformatics 25 (12), i365-i373, 2009
1152009
Analysis of plasma cell-free DNA by ultradeep sequencing in patients with stages I to III colorectal cancer
T Reinert, TV Henriksen, E Christensen, S Sharma, R Salari, H Sethi, ...
JAMA oncology 5 (8), 1124-1131, 2019
1082019
Genome evolution during progression to breast cancer
DE Newburger, D Kashef-Haghighi, Z Weng, R Salari, RT Sweeney, ...
Genome research 23 (7), 1097-1108, 2013
902013
Early detection of metastatic relapse and monitoring of therapeutic efficacy by ultra-deep sequencing of plasma cell-free DNA in patients with urothelial bladder carcinoma
E Christensen, K Birkenkamp-Demtröder, H Sethi, S Shchegrova, R Salari, ...
Journal of Clinical Oncology 37 (18), 1547-1557, 2019
702019
Inferring cancer subnetwork markers using density-constrained biclustering
P Dao, R Colak, R Salari, F Moser, E Davicioni, A Schönhuth, M Ester
Bioinformatics 26 (18), i625-i631, 2010
652010
Personalized detection of circulating tumor DNA antedates breast cancer metastatic recurrence
RC Coombes, K Page, R Salari, RK Hastings, A Armstrong, S Ahmed, ...
Clinical Cancer Research 25 (14), 4255-4263, 2019
582019
Sensitive measurement of single-nucleotide polymorphism-induced changes of RNA conformation: application to disease studies
R Salari, C Kimchi-Sarfaty, MM Gottesman, TM Przytycka
Nucleic acids research 41 (1), 44-53, 2013
552013
Characterization of coding synonymous and non-synonymous variants in ADAMTS13 using ex vivo and in silico approaches
NC Edwards, ZA Hing, A Perry, A Blaisdell, DB Kopelman, R Fathke, ...
PLoS One 7 (6), e38864, 2012
542012
Fast prediction of RNA-RNA interaction
R Salari, R Backofen, SC Sahinalp
Algorithms for molecular Biology 5 (1), 5, 2010
542010
Time and space efficient RNA-RNA interaction prediction via sparse folding
R Salari, M Möhl, S Will, SC Sahinalp, R Backofen
Annual International Conference on Research in Computational Molecular …, 2010
452010
Protein-protein interaction network evaluation for identifying potential drug targets
F Hormozdiari, R Salari, V Bafna, SC Sahinalp
Journal of Computational Biology 17 (5), 669-684, 2010
372010
Module Cover–A new approach to genotype-phenotype studies
YA Kim, R Salari, S Wuchty, TM Przytycka
Biocomputing 2013, 135-146, 2013
282013
Methods and compositions for determining ploidy
HE Kirkizlar, R Salari, S Sigurjonsson, B Zimmermann, A Ryan, ...
US Patent App. 15/573,800, 2018
272018
Sparsification of RNA structure prediction including pseudoknots
M Möhl, R Salari, S Will, R Backofen, SC Sahinalp
Algorithms for Molecular Biology 5 (1), 1-10, 2010
272010
The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study
F Hormozdiari, R Salari, M Hsing, A Schönhuth, SK Chan, SC Sahinalp, ...
Journal of Computational Biology 16 (2), 159-167, 2009
262009
Teasing apart translational and transcriptional components of stochastic variations in eukaryotic gene expression
R Salari, D Wojtowicz, J Zheng, D Levens, Y Pilpel, TM Przytycka
Public Library of Science 8 (8), e1002644, 2012
242012
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Articles 1–20