Sam Kovaka
Sam Kovaka
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Transcriptome assembly from long-read RNA-seq alignments with StringTie2
S Kovaka, AV Zimin, GM Pertea, R Razaghi, SL Salzberg, M Pertea
Genome Biology 20 (1), 1-13, 2019
Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED
S Kovaka, Y Fan, B Ni, W Timp, MC Schatz
Nature Biotechnology 39 (4), 431-441, 2021
Novel circular RNA circNF1 acts as a molecular sponge, promoting gastric cancer by absorbing miR-16
Z Wang, K Ma, S Pitts, Y Cheng, X Liu, X Ke, S Kovaka, H Ashktorab, ...
Endocrine-related cancer 26 (3), 265-277, 2019
Genomics and development of Lentinus tigrinus, a white-rot wood-decaying mushroom with dimorphic fruiting bodies
B Wu, Z Xu, A Knudson, A Carlson, N Chen, S Kovaka, K LaButti, ...
Genome biology and evolution, 2018
Pan-genomic Matching Statistics for Targeted Nanopore Sequencing
O Ahmed, M Rossi, S Kovaka, MC Schatz, T Gagie, C Boucher, ...
iScience, 102696, 2021
High resolution copy number inference in cancer using short-molecule nanopore sequencing
T Baslan, S Kovaka, FJ Sedlazeck, Y Zhang, R Wappel, S Tian, SW Lowe, ...
Nucleic acids research 49 (21), e124-e124, 2021
Tracking the History of Knowledge Using Historical Editions of Encyclopedia Britannica
M Gronas, A Rumshisky, A Gabrovski, S Kovaka, H Chen
Adaptation of Language Resources and Tools for Processing Cultural Heritage …, 2012
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