| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 9295 | 2019 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 898 | 2018 |
| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature Methods 17 (9), 905-908, 2020 | 547 | 2020 |
| Reproducible molecular networking of untargeted mass spectrometry data using GNPS AT Aron, EC Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ... Nature protocols 15 (6), 1954-1991, 2020 | 289 | 2020 |
| MolNetEnhancer: Enhanced molecular networks by integrating metabolome mining and annotation tools M Ernst, KB Kang, AM Caraballo-Rodríguez, LF Nothias, J Wandy, ... Metabolites 9 (7), 144, 2019 | 220 | 2019 |
| Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing M Ernst, DB Silva, RR Silva, RZN Vêncio, NP Lopes Natural product reports 31 (6), 784-806, 2014 | 201 | 2014 |
| Global medicinal uses of Euphorbia L. (Euphorbiaceae) M Ernst, OM Grace, CH Saslis-Lagoudakis, N Nilsson, HT Simonsen, ... Journal of ethnopharmacology 176, 90-101, 2015 | 200 | 2015 |
| Mass spectrometry searches using MASST M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ... Nature biotechnology 38 (1), 23-26, 2020 | 129 | 2020 |
| Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites X Li, AD Brejnrod, M Ernst, M Rykær, J Herschend, NMC Olsen, ... Environment international 126, 454-467, 2019 | 114 | 2019 |
| Mass spectrometry of flavonoid vicenin-2, based sunlight barriers in Lychnophora species DB Silva, ICC Turatti, DR Gouveia, M Ernst, SP Teixeira, NP Lopes Scientific reports 4 (1), 1-8, 2014 | 84 | 2014 |
| Home chemical and microbial transitions across urbanization LI Mccall, C Callewaert, Q Zhu, SJ Song, A Bouslimani, JJ Minich, M Ernst, ... Nature Microbiology 5 (1), 108-115, 2020 | 72 | 2020 |
| Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data AA Aksenov, I Laponogov, Z Zhang, SLF Doran, I Belluomo, D Veselkov, ... Nature biotechnology 39 (2), 169-173, 2021 | 71 | 2021 |
| Evolutionary prediction of medicinal properties in the genus Euphorbia L. M Ernst, CH Saslis-Lagoudakis, OM Grace, N Nilsson, HT Simonsen, ... Scientific Reports 6 (1), 1-10, 2016 | 70 | 2016 |
| Chemically informed analyses of metabolomics mass spectrometry data with Qemistree A Tripathi, Y Vázquez-Baeza, JM Gauglitz, M Wang, K Dührkop, ... Nature Chemical Biology 17 (2), 146-151, 2021 | 68 | 2021 |
| Identification of the bacterial biosynthetic gene clusters of the oral microbiome illuminates the unexplored social language of bacteria during health and disease G Aleti, JL Baker, X Tang, R Alvarez, M Dinis, NC Tran, AV Melnik, ... MBio 10 (2), e00321-19, 2019 | 63 | 2019 |
| ReDU: a framework to find and reanalyze public mass spectrometry data AK Jarmusch, M Wang, CM Aceves, RS Advani, S Aguirre, AA Aksenov, ... Nature Methods 17 (9), 901-904, 2020 | 58 | 2020 |
| Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra S Rogers, CW Ong, J Wandy, M Ernst, L Ridder, JJJ Van Der Hooft Faraday Discussions 218, 284-302, 2019 | 57 | 2019 |
| Comprehensive mass spectrometry‐guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae KB Kang, M Ernst, JJJ Van Der Hooft, RR Da Silva, J Park, MH Medema, ... The Plant Journal 98 (6), 1134-1144, 2019 | 50 | 2019 |
| Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages JM Gauglitz, CM Aceves, AA Aksenov, G Aleti, J Almaliti, A Bouslimani, ... Food chemistry 302, 125290, 2020 | 49 | 2020 |
| A phylogenetic road map to antimalarial Artemisia species J Pellicer, CH Saslis-Lagoudakis, E Carrió, M Ernst, T Garnatje, OM Grace, ... Journal of ethnopharmacology 225, 1-9, 2018 | 41 | 2018 |
Pieter C DorresteinUCSDVerified email at ucsd.edu
