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Beth Shapiro
Beth Shapiro
UC Santa Cruz Genomics Institute; Ecology and Evolutionary Biology, UC Santa Cruz
Verificeret mail på ucsc.edu
Titel
Citeret af
Citeret af
År
Bayesian coalescent inference of past population dynamics from molecular sequences
AJ Drummond, A Rambaut, B Shapiro, OG Pybus
Molecular biology and evolution 22 (5), 1185-1192, 2005
33552005
Whole-genome analyses resolve early branches in the tree of life of modern birds
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
Science 346 (6215), 1320-1331, 2014
18902014
Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
13322021
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
L Orlando, A Ginolhac, G Zhang, D Froese, A Albrechtsen, M Stiller, ...
Nature 499 (7456), 74-78, 2013
9722013
Diverse plant and animal genetic records from Holocene and Pleistocene sediments
E Willerslev, AJ Hansen, J Binladen, TB Brand, MTP Gilbert, B Shapiro, ...
Science 300 (5620), 791-795, 2003
8072003
Rise and fall of the Beringian steppe bison
B Shapiro, AJ Drummond, A Rambaut, MC Wilson, PE Matheus, AV Sher, ...
Science 306 (5701), 1561-1565, 2004
7822004
Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
B Shapiro, A Rambaut, AJ Drummond
Molecular biology and evolution 23 (1), 7-9, 2006
7782006
Species-specific responses of Late Quaternary megafauna to climate and humans
ED Lorenzen, D Nogués-Bravo, L Orlando, J Weinstock, J Binladen, ...
Nature 479 (7373), 359-364, 2011
7712011
Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA
HN Poinar, C Schwarz, J Qi, B Shapiro, RDE MacPhee, B Buigues, ...
science 311 (5759), 392-394, 2006
7612006
Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs
O Thalmann, B Shapiro, P Cui, VJ Schuenemann, SK Sawyer, ...
Science 342 (6160), 871-874, 2013
6752013
Skyline‐plot methods for estimating demographic history from nucleotide sequences
SYW Ho, B Shapiro
Molecular ecology resources 11 (3), 423-434, 2011
5152011
Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci
MS Gill, P Lemey, NR Faria, A Rambaut, B Shapiro, MA Suchard
Molecular biology and evolution 30 (3), 713-724, 2013
5112013
Dynamics of Pleistocene population extinctions in Beringian brown bears
I Barnes, P Matheus, B Shapiro, D Jensen, A Cooper
Science 295 (5563), 2267-2270, 2002
4262002
The earliest evidence for anatomically modern humans in northwestern Europe
T Higham, T Compton, C Stringer, R Jacobi, B Shapiro, E Trinkaus, ...
Nature 479 (7374), 521-524, 2011
3782011
Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs
CJ Edwards, R Bollongino, A Scheu, A Chamberlain, A Tresset, JD Vigne, ...
Proceedings of the Royal Society B: Biological Sciences 274 (1616), 1377-1385, 2007
3492007
Prehistoric genomes reveal the genetic foundation and cost of horse domestication
M Schubert, H Jónsson, D Chang, C Der Sarkissian, L Ermini, A Ginolhac, ...
Proceedings of the National Academy of Sciences 111 (52), E5661-E5669, 2014
3362014
Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses
C Firth, A Kitchen, B Shapiro, MA Suchard, EC Holmes, A Rambaut
Molecular biology and evolution 27 (9), 2038-2051, 2010
3172010
Evidence for time dependency of molecular rate estimates
SYW Ho, B Shapiro, MJ Phillips, A Cooper, AJ Drummond
Systematic biology 56 (3), 515-522, 2007
3112007
Dense sampling of bird diversity increases power of comparative genomics
S Feng, J Stiller, Y Deng, J Armstrong, QI Fang, AH Reeve, D Xie, G Chen, ...
Nature 587 (7833), 252-257, 2020
2982020
Insights into the evolutionary history of an emerging livestock pathogen: porcine circovirus 2
C Firth, MA Charleston, S Duffy, B Shapiro, EC Holmes
Journal of virology 83 (24), 12813-12821, 2009
2942009
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Artikler 1–20