Follow
Abbas Shirinifard
Title
Cited by
Cited by
Year
Multi-scale modeling of tissues using CompuCell3D
MH Swat, GL Thomas, JM Belmonte, A Shirinifard, D Hmeljak, JA Glazier
Methods in cell biology 110, 325-366, 2012
4882012
3D multi-cell simulation of tumor growth and angiogenesis
A Shirinifard, JS Gens, BL Zaitlen, NJ Popławski, M Swat, JA Glazier
PloS one 4 (10), e7190, 2009
3022009
Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells
DP Hoffman, G Shtengel, CS Xu, KR Campbell, M Freeman, L Wang, ...
Science 367 (6475), eaaz5357, 2020
2642020
Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth
RMH Merks, ED Perryn, A Shirinifard, JA Glazier
PLoS computational biology 4 (9), e1000163, 2008
2632008
The dynamic epigenetic landscape of the retina during development, reprogramming, and tumorigenesis
I Aldiri, B Xu, L Wang, X Chen, D Hiler, L Griffiths, M Valentine, ...
Neuron 94 (3), 550-568. e10, 2017
2102017
Targeting the DNA repair pathway in Ewing sarcoma
E Stewart, R Goshorn, C Bradley, LM Griffiths, C Benavente, NR Twarog, ...
Cell reports 9 (3), 829-840, 2014
1702014
Simulation of single-species bacterial-biofilm growth using the Glazier-Graner-Hogeweg model and the CompuCell3D modeling environment
NJ Popławski, A Shirinifard, M Swat, JA Glazier
Mathematical biosciences and engineering: MBE 5 (2), 355, 2008
732008
Computer simulations of cell sorting due to differential adhesion
Y Zhang, GL Thomas, M Swat, A Shirinifard, JA Glazier
PloS one 6 (10), e24999, 2011
712011
Ovarian tumor attachment, invasion, and vascularization reflect unique microenvironments in the peritoneum: insights from xenograft and mathematical models
MP Steinkamp, KK Winner, S Davies, C Muller, Y Zhang, RM Hoffman, ...
Frontiers in oncology 3, 97, 2013
572013
Adhesion failures determine the pattern of choroidal neovascularization in the eye: a computer simulation study
A Shirinifard, JA Glazier, M Swat, JS Gens, F Family, Y Jiang, ...
PLoS computational biology 8 (5), e1002440, 2012
532012
Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes
H Wang, AK Diaz, TI Shaw, Y Li, M Niu, JH Cho, BS Paugh, Y Zhang, ...
Nature communications 10 (1), 3718, 2019
512019
Retinal cell type DNA methylation and histone modifications predict reprogramming efficiency and retinogenesis in 3D organoid cultures
L Wang, D Hiler, B Xu, I AlDiri, X Chen, X Zhou, L Griffiths, M Valentine, ...
Cell Reports 22 (10), 2601-2614, 2018
492018
Development and characterization of a human orthotopic neuroblastoma xenograft
E Stewart, A Shelat, C Bradley, X Chen, S Federico, S Thiagarajan, ...
Developmental biology 407 (2), 344-355, 2015
382015
Emergent stratification in solid tumors selects for reduced cohesion of tumor cells: a multi-cell, virtual-tissue model of tumor evolution using compucell3d
MH Swat, GL Thomas, A Shirinifard, SG Clendenon, JA Glazier
PloS one 10 (6), e0127972, 2015
382015
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents
JP Sluka, A Shirinifard, M Swat, A Cosmanescu, RW Heiland, JA Glazier
Bioinformatics 30 (16), 2367-2374, 2014
352014
Interleukin-15 enhances anti-GD2 antibody-mediated cytotoxicity in an orthotopic PDX model of neuroblastoma
R Nguyen, A Moustaki, JL Norrie, S Brown, WJ Akers, A Shirinifard, ...
Clinical Cancer Research 25 (24), 7554-7564, 2019
342019
Oxygen tension and the VHL-Hif1α pathway determine onset of neuronal polarization and cerebellar germinal zone exit
JA Kullmann, N Trivedi, D Howell, C Laumonnerie, V Nguyen, ...
Neuron 106 (4), 607-623. e5, 2020
332020
The tumor cell‐secreted matricellular protein WISP 1 drives pro‐metastatic collagen linearization
H Jia, J Janjanam, SC Wu, R Wang, G Pano, M Celestine, O Martinot, ...
The EMBO Journal 38 (16), e101302, 2019
292019
Front instabilities and invasiveness of simulated 3D avascular tumors
NJ Poplawski, A Shirinifard, U Agero, JS Gens, M Swat, JA Glazier
PloS one 5 (5), e10641, 2010
292010
St. Jude Children’s Research Hospital—Washington University Pediatric Cancer Genome Project, The dynamic epigenetic landscape of the retina during development, reprogramming …
I Aldiri, B Xu, L Wang, X Chen, D Hiler, L Griffiths, M Valentine, ...
Neuron 94 (550-568), e10, 2017
232017
The system can't perform the operation now. Try again later.
Articles 1–20