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Rebecca F Alford
Rebecca F Alford
Verified email at its.jnj.com
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Cited by
Year
The Rosetta all-atom energy function for macromolecular modeling and design
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 13 (6), 3031-3048, 2017
12372017
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5582020
An integrated framework advancing membrane protein modeling and design
RF Alford, J Koehler Leman, BD Weitzner, AM Duran, DC Tilley, A Elazar, ...
PLoS computational biology 11 (9), e1004398, 2015
1692015
Robust classification of protein variation using structural modelling and large-scale data integration
EH Baugh, R Simmons-Edler, CL Müller, RF Alford, N Volfovsky, AE Lash, ...
Nucleic acids research 44 (6), 2501-2513, 2016
712016
Protein structure prediction and design in a biologically realistic implicit membrane
RF Alford, PJ Fleming, KG Fleming, JJ Gray
Biophysical journal 118 (8), 2042-2055, 2020
572020
A humanized yeast system to analyze cleavage of prelamin A by ZMPSTE24
ED Spear, RF Alford, TD Babatz, KM Wood, OW Mossberg, ...
Methods 157, 47-55, 2019
192019
Protein docking and steered molecular dynamics suggest alternative phospholamban-binding sites on the SERCA calcium transporter
RF Alford, N Smolin, HS Young, JJ Gray, SL Robia
Journal of Biological Chemistry 295 (32), 11262-11274, 2020
172020
Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks
J Koehler Leman, S Lyskov, SM Lewis, J Adolf-Bryfogle, RF Alford, ...
Nature communications 12 (1), 6947, 2021
152021
A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design
RF Alford, A Leaver-Fay, L Gonzales, EL Dolan, JJ Gray
PLoS computational biology 13 (12), e1005837, 2017
142017
PyRosetta Jupyter notebooks teach biomolecular structure prediction and design
KH Le, J Adolf-Bryfogle, JC Klima, S Lyskov, JW Labonte, S Bertolani, ...
The Biophysicist 2 (1), 108-122, 2021
132021
Membrane protein engineering with rosetta
RF Alford, JJ Gray
Computational Design of Membrane Proteins, 43-57, 2021
52021
Diverse scientific benchmarks for implicit membrane energy functions
RF Alford, R Samanta, JJ Gray
Journal of chemical theory and computation 17 (8), 5248-5261, 2021
32021
Correction to “the rosetta all-atom energy function for macromolecular modeling and design”
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 18 (7), 4594-4594, 2022
22022
Rosetta-MPDock: a novel computational tool for protein-protein docking within the membrane bilayer
JK Leman, RF Alford, JJ Gray
Biophysical Journal 108 (2), 250a, 2015
22015
EGGNet, a generalizable geometric deep learning framework for protein complex pose scoring
Z Wang, R Brand, J Adolf-Bryfogle, J Grewal, Y Qi, SA Combs, ...
ACS omega, 2024
2024
Toward biologically realistic computational membrane protein structure prediction and design
RF Alford
The Johns Hopkins University, 2020
2020
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