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Carolina Barra
Carolina Barra
Assistant Professor at Technical University of Denmark Kongens Lyngby, Denmark
Bekræftet mail på dtu.dk
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B cell–helper neutrophils stimulate the diversification and production of immunoglobulin in the marginal zone of the spleen
I Puga, M Cols, CM Barra, B He, L Cassis, M Gentile, L Comerma, ...
Nature immunology 13 (2), 170-180, 2012
7252012
Innate lymphoid cells integrate stromal and immunological signals to enhance antibody production by splenic marginal zone B cells
G Magri, M Miyajima, S Bascones, A Mortha, I Puga, L Cassis, CM Barra, ...
Nature immunology 15 (4), 354-364, 2014
2782014
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd
Z Wang, CD Monteiro, KM Jagodnik, NF Fernandez, GW Gundersen, ...
Nature communications 7 (1), 1-11, 2016
2162016
Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data
B Reynisson, C Barra, S Kaabinejadian, WH Hildebrand, B Peters, ...
Journal of proteome research 19 (6), 2304-2315, 2020
1882020
Stromal endothelial cells establish a bidirectional crosstalk with chronic lymphocytic leukemia cells through the TNF-related factors BAFF, APRIL, and CD40L
M Cols, CM Barra, B He, I Puga, W Xu, A Chiu, W Tam, DM Knowles, ...
The Journal of Immunology 188 (12), 6071-6083, 2012
1012012
An analysis of natural T cell responses to predicted tumor neoepitopes
AM Bjerregaard, M Nielsen, V Jurtz, CM Barra, SR Hadrup, Z Szallasi, ...
Frontiers in immunology, 1566, 2017
782017
Regulation of mucosal IgA responses: lessons from primary immunodeficiencies
A Cerutti, M Cols, M Gentile, L Cassis, CM Barra, B He, I Puga, K Chen
Annals of the New York Academy of Sciences 1238 (1), 132-144, 2011
662011
NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T-cell epitope predictions
B Alvarez, B Reynisson, C Barra, S Buus, N Ternette, T Connelley, ...
Molecular & Cellular Proteomics 18 (12), 2459-2477, 2019
642019
Footprints of antigen processing boost MHC class II natural ligand predictions
C Barra, B Alvarez, S Paul, A Sette, B Peters, M Andreatta, S Buus, ...
Genome medicine 10 (1), 1-15, 2018
582018
Galacto-configured aminocyclitol phytoceramides are potent in vivo invariant natural killer T cell stimulators
Y Harrak, CM Barra, A Delgado, AR Castaño, A Llebaria
Journal of the American Chemical Society 133 (31), 12079-12084, 2011
502011
Computational tools for the identification and interpretation of sequence motifs in immunopeptidomes
B Alvarez, C Barra, M Nielsen, M Andreatta
Proteomics 18 (12), 1700252, 2018
442018
Structural and functional characterization of a novel nonglycosidic type I NKT agonist with immunomodulatory properties
J Kerzerho, DY Esther, CM Barra, E Alari-Pahisa, E Girardi, Y Harrak, ...
The Journal of Immunology 188 (5), 2254-2265, 2012
302012
Aminocyclitol‐Substituted Phytoceramides and their Effects on iNKT Cell Stimulation
Y Harrak, CM Barra, C Bedia, A Delgado, AR Castaño, A Llebaria
ChemMedChem: Chemistry Enabling Drug Discovery 4 (10), 1608-1613, 2009
262009
B–helper neutrophils stimulate immunoglobulin diversification and production in the marginal zone of the spleen
I Puga, M Cols, CM Barra, B He, L Cassis, M Gentile, L Comerma, ...
Nature immunology 13 (2), 170, 2012
122012
Immunopeptidomic data integration to artificial neural networks enhances protein-drug immunogenicity prediction
C Barra, C Ackaert, B Reynisson, J Schockaert, LE Jessen, M Watson, ...
Frontiers in immunology 11, 1304, 2020
92020
Accurate MHC motif deconvolution of immunopeptidomics data reveals a significant contribution of DRB3, 4 and 5 to the total DR immunopeptidome
S Kaabinejadian, C Barra, B Alvarez, H Yari, WH Hildebrand, M Nielsen
Frontiers in immunology 13, 2022
72022
NetMHCphosPan-Pan-specific prediction of MHC class I antigen presentation of phosphorylated ligands
CT Refsgaard, C Barra, X Peng, N Ternette, M Nielsen
ImmunoInformatics 1, 100005, 2021
32021
Improved prediction of HLA antigen presentation hotspots: Applications for immunogenicity risk assessment of therapeutic proteins
AS Attermann, C Barra, B Reynisson, HS Schultz, U Leurs, K Lamberth, ...
Immunology 162 (2), 208-219, 2021
32021
The interdependence of machine learning and LC-MS approaches for an unbiased understanding of the cellular immunopeptidome
M Nielsen, N Ternette, C Barra
Expert Review of Proteomics, 1-12, 2022
22022
Erratum: B cell-helper neutrophils stimulate the diversification and production of immunoglobulin in the marginal zone of the spleen (Nature Immunology (2012) 13 (170-180))
I Puga, M Cols, CM Barra, B He, L Cassis, M Gentile, L Comerma, ...
Nature Immunology 15 (2), 205, 2014
22014
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