| Multidrug evolutionary strategies to reverse antibiotic resistance M Baym, LK Stone, R Kishony Science 351 (6268), aad3292, 2016 | 742 | 2016 |
| Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes M Baym, S Kryazhimskiy, TD Lieberman, H Chung, MM Desai, R Kishony PLoS ONE 10 (5), e0128036, 2015 | 741 | 2015 |
| Spatiotemporal microbial evolution on antibiotic landscapes M Baym, TD Lieberman, ED Kelsic, R Chait, R Gross, I Yelin, R Kishony Science 353 (6304), 1147-1151, 2016 | 584 | 2016 |
| IsoRankN: spectral methods for global alignment of multiple protein networks CS Liao, K Lu, M Baym, R Singh, B Berger Bioinformatics 25 (12), i253-i258, 2009 | 496 | 2009 |
| Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation DT Riglar, TW Giessen, M Baym, SJ Kerns, MJ Niederhuber, RT Bronson, ... Nature Biotechnology, 2017 | 370 | 2017 |
| Large-scale identification of genetic design strategies using local search DS Lun, G Rockwell, NJ Guido, M Baym, JA Kelner, B Berger, JE Galagan, ... Molecular systems biology 5 (1), 2009 | 213 | 2009 |
| Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes AC Palmer, E Toprak, M Baym, S Kim, A Veres, S Bershtein, R Kishony Nature Communications 6, 7385, 2015 | 160 | 2015 |
| Compressive Genomics PR Loh, M Baym, B Berger Nature Biotechnology 30 (7), 627-630, 2012 | 146 | 2012 |
| IsoBase: a database of functionally related proteins across PPI networks D Park, R Singh, M Baym, CS Liao, B Berger Nucleic acids research 39 (suppl 1), D295-D300, 2011 | 137 | 2011 |
| Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing K Břinda, A Callendrello, KC Ma, DR MacFadden, T Charalampous, ... Nature Microbiology, 1-10, 2020 | 127* | 2020 |
| Prophages encode phage-defense systems with cognate self-immunity SV Owen, N Wenner, CL Dulberger, EV Rodwell, A Bowers-Barnard, ... Cell Host & Microbe, 2021 | 92 | 2021 |
| System and Method for Monitoring Potential Spread of an Infectious Agent in an Environment MH Baym, RA Hyde, MY Ishikawa, CT Tegreene, LL Wood US Patent App. 13/890,549, 2013 | 71 | 2013 |
| The bacterial toxin colibactin triggers prophage induction JE Silpe, JWH Wong, SV Owen, M Baym, EP Balskus Nature 603 (7900), 315-320, 2022 | 69 | 2022 |
| Compressive genomics for protein databases NM Daniels, A Gallant, J Peng, LJ Cowen, M Baym, B Berger Bioinformatics 29 (13), i283-i290, 2013 | 64 | 2013 |
| Rapid Construction of a Whole-genome Transposon Insertion Collection for Shewanella oneidensis by Knockout Sudoku M Baym, L Shaket, IA Anzai, O Adesina, B Barstow Nature Communications 7, 13270, 2016 | 63 | 2016 |
| Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques JA Baaijens, A Zulli, IM Ott, I Nika, MJ van der Lugt, ME Petrone, T Alpert, ... Genome Biology 23 (1), 1-20, 2022 | 62* | 2022 |
| Compounds that select against the tetracycline-resistance efflux pump LK Stone, M Baym, TD Lieberman, R Chait, J Clardy, R Kishony Nature Chemical Biology 12 (11), 902-904, 2016 | 50 | 2016 |
| Identification of a pathway for electron uptake in Shewanella oneidensis AR Rowe, F Salimijazi, L Trutschel, J Sackett, O Adesina, I Anzai, ... Communications biology 4 (1), 1-10, 2021 | 47 | 2021 |
| Simplitigs as an efficient and scalable representation of de Bruijn graphs K Břinda, M Baym, G Kucherov Genome biology 22, 1-24, 2021 | 45 | 2021 |
| A swapped genetic code prevents viral infections and gene transfer A Nyerges, S Vinke, R Flynn, SV Owen, EA Rand, B Budnik, E Keen, ... Nature 615 (7953), 720-727, 2023 | 44 | 2023 |
Roy KishonyVerified email at hms.harvard.edu
