| Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements MR Mumbach, AT Satpathy, EA Boyle, C Dai, BG Gowen, SW Cho, ... Nature genetics 49 (11), 1602, 2017 | 448 | 2017 |
| Atlas of subcellular RNA localization revealed by APEX-seq FM Fazal, S Han, KR Parker, P Kaewsapsak, J Xu, AN Boettiger, ... Cell, 2019 | 444 | 2019 |
| Structural organization of the inactive X chromosome in the mouse L Giorgetti, BR Lajoie, AC Carter, M Attia, Y Zhan, J Xu, CJ Chen, ... Nature, 2016 | 416 | 2016 |
| Promoter of lncRNA gene PVT1 is a tumor-suppressor DNA boundary element SW Cho, J Xu, R Sun, MR Mumbach, AC Carter, YG Chen, KE Yost, J Kim, ... Cell 173 (6), 1398-1412. e22, 2018 | 410 | 2018 |
| Assessment of the genetic basis of rosacea by genome-wide association study ALS Chang, I Raber, J Xu, R Li, R Spitale, J Chen, AK Kiefer, C Tian, ... Journal of Investigative Dermatology 135 (6), 1548-1555, 2015 | 211 | 2015 |
| Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data Y Tao, J Ruan, SH Yeh, X Lu, Y Wang, W Zhai, J Cai, S Ling, Q Gong, ... Proceedings of the National Academy of Sciences 108 (29), 12042-12047, 2011 | 164 | 2011 |
| Overexpression of the soybean transcription factor GmDof4 significantly enhances the lipid content of Chlorella ellipsoidea J Zhang, Q Hao, L Bai, J Xu, W Yin, L Song, L Xu, X Guo, C Fan, Y Chen, ... Biotechnology for biofuels 7 (1), 128, 2014 | 139 | 2014 |
| Genome-wide temporal profiling of transcriptome and open chromatin of early cardiomyocyte differentiation derived from hiPSCs and hESCs Q Liu, C Jiang, J Xu, MT Zhao, K Van Bortle, X Cheng, G Wang, ... Circulation research 121 (4), 376-391, 2017 | 116 | 2017 |
| Single-cell lineage tracing by endogenous mutations enriched in transposase accessible mitochondrial DNA J Xu, K Nuno, UM Litzenburger, Y Qi, MR Corces, R Majeti, HY Chang eLife 8, e45105, 2019 | 111 | 2019 |
| Landscape of monoallelic DNA accessibility in mouse embryonic stem cells and neural progenitor cells J Xu, AC Carter, AV Gendrel, M Attia, J Loftus, WJ Greenleaf, R Tibshirani, ... Nature genetics 49 (3), 377-386, 2017 | 86 | 2017 |
| The novel lncRNA lnc-NR2F1 is pro-neurogenic and mutated in human neurodevelopmental disorders CE Ang, Q Ma, OL Wapinski, SH Fan, RA Flynn, QY Lee, B Coe, ... eLife 8, e41770, 2019 | 71 | 2019 |
| The evolution of evolvability in microRNA target sites in vertebrates J Xu, R Zhang, Y Shen, G Liu, X Lu, CI Wu Genome research 23 (11), 1810-1816, 2013 | 68 | 2013 |
| Molecular and Neural Functions of Rai1, the Causal Gene for Smith-Magenis Syndrome WH Huang, CJ Guenthner, J Xu, T Nguyen, LA Schwarz, AW Wilkinson, ... Neuron 92 (2), 392-406, 2016 | 62 | 2016 |
| Functional conservation of both CDS-and 3′-UTR-located microRNA binding sites between species G Liu, R Zhang, J Xu, CI Wu, X Lu Molecular biology and evolution 32 (3), 623-628, 2014 | 59 | 2014 |
| Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility X Lu, JA Shapiro, CT Ting, Y Li, C Li, J Xu, H Huang, YJ Cheng, ... Genome research 20 (8), 1097-1102, 2010 | 55 | 2010 |
| Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation AC Carter, J Xu, MY Nakamoto, Y Wei, BJ Zarnegar, Q Shi, JP Broughton, ... Elife 9, e54508, 2020 | 42 | 2020 |
| PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments JP Smith, MR Corces, J Xu, VP Reuter, HY Chang, NC Sheffield NAR Genomics and Bioinformatics 3 (4), lqab101, 2021 | 40 | 2021 |
| Free-living human cells reconfigure their chromosomes in the evolution back to uni-cellularity J Xu, X Peng, Y Chen, Y Zhang, Q Ma, L Liang, AC Carter, X Lu, CI Wu Elife 6, e28070, 2017 | 34 | 2017 |
| Transcriptome sequencing reveals genetic mechanisms underlying the transition between the laying and brooding phases and gene expression changes associated with divergent … X Shen, X Bai, J Xu, M Zhou, H Xu, Q Nie, X Lu, X Zhang Molecular Biology Reports 43 (9), 977-989, 2016 | 31 | 2016 |
| PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modifications J Fang, Q Ma, C Chu, B Huang, L Li, P Cai, PJ Batista, KEM Tolentino, ... Genome Biology 20 (1), 1-21, 2019 | 16 | 2019 |
Howard Y. ChangStanford UniversityVerified email at stanford.edu
