| Rapid neighbour-joining M Simonsen, T Mailund, CNS Pedersen Algorithms in Bioinformatics: 8th International Workshop, WABI 2008 …, 2008 | 191 | 2008 |
| Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement K Gaurav, S Arora, P Silva, J Sánchez-Martín, R Horsnell, L Gao, GS Brar, ... Nature biotechnology 40 (3), 422-431, 2022 | 122 | 2022 |
| Gene Ontology-driven inference of protein–protein interactions using inducers SR Maetschke, M Simonsen, MJ Davis, MA Ragan Bioinformatics 28 (1), 69-75, 2012 | 93 | 2012 |
| Inference of large phylogenies using neighbour-joining M Simonsen, T Mailund, CNS Pedersen Biomedical Engineering Systems and Technologies: Third International Joint …, 2011 | 32 | 2011 |
| GPU-accelerated high-accuracy molecular docking using guided differential evolution: real world applications M Simonsen, CNS Pedersen, MH Christensen, R Thomsen Proceedings of the 13th annual conference on genetic and evolutionary …, 2011 | 26 | 2011 |
| Algorithms in Bioinformatics M Simonsen, T Mailund, CNS Pedersen Lecture Notes in Computer Science, Springer, Berlin, Heidelberg, 2008 | 16 | 2008 |
| Evolution of the bread wheat D-subgenome and enriching it with diversity from Aegilops tauschii K Gaurav, S Arora, P Silva, J Sánchez-Martín, R Horsnell, L Gao, GS Brar, ... Biorxiv, 2021.01. 31.428788, 2021 | 15 | 2021 |
| Automatic selection of reference taxa for protein–protein interaction prediction with phylogenetic profiling M Simonsen, SR Maetschke, MA Ragan Bioinformatics 28 (6), 851-857, 2012 | 14 | 2012 |
| Rapid computation of distance estimators from nucleotide and amino acid alignments M Simonsen, CNS Pedersen Proceedings of the 2011 ACM Symposium on Applied Computing, 89-93, 2011 | 14 | 2011 |
| Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools A Alexeyenko, B Nystedt, F Vezzi, E Sherwood, R Ye, B Knudsen, ... BMC genomics 15, 1-10, 2014 | 12 | 2014 |
| Building very large neighbour-joining trees M Simonsen, T Mailund, CNS Pedersen BIOINFORMATICS 2010: Proceedings of the First International Conference on …, 2010 | 8 | 2010 |
| International Workshop on Algorithms in Bioinformatics M Simonsen, T Mailund, CNS Pedersen Rapid neighbour-joining, 113-122, 2008 | 6 | 2008 |
| CLC Sequence Viewer, 6.7. 1 B Knudsen, T Knudsen, M Flensborg, H Sandmann, M Heltzen, ... CLC bio, 2012 | 4 | 2012 |
| Phylogenetic inference on cell processors M Simonsen Master thesis, Aarhus University, 2008 | 2 | 2008 |
| Rapid neighbour-joining In: Crandall KA, Lagergren J.(eds.) Algorithms in Bioinformatics M Simonsen Lecture Notes in Computer Science, Springer, Berlin, Heidelberg, 113-22, 2008 | 2 | 2008 |
| Leveraging Unique Molecular Indices to Detect Chimeric Gene Fusions B Vilhjalmsson, F Lescai, T Ras, Z Etches, V Gregersen, RG Madsen, ... JOURNAL OF MOLECULAR DIAGNOSTICS 20 (6), 905-906, 2018 | | 2018 |
| QIAseq Digital Sequencing and Biomedical Genomics Workbench: Application to Liquid Biopsy in Bladder Cancer F Lescai, E Haenssler, M Schlumpberger, C Kindler, T Rask, R Madsen, ... JOURNAL OF MOLECULAR DIAGNOSTICS 20 (3), S1-S2, 2018 | | 2018 |
| Supplementary material Gene Ontology-driven inference of protein-protein interactions using inducers SR Maetschke, M Simonsen, MJ Davis, MA Ragan | | 2011 |
| Efficient Algorithms for Tree Reconstruction and Prediction of Molecular Interactions: A Dissertation Presented to the Faculty of Science and Technology of Aarhus University in … M Simonsen Bioinformatics Research Centre, Aarhus University, 2011 | | 2011 |
| Efficient Algorithms for Tree Reconstruction and Prediction of Molecular Interactions M Simonsen Bioinformatics Research Centre, Department of Computer Science, Aarhus …, 2011 | | 2011 |
