Alicia Oshlack

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Gordon K SmythDivision Head, Bioinformatics, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Belinda PhipsonLaboratory Head, The Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Jovana MaksimovicSenior Researcher, Peter MacCallum Cancer CentreVerified email at petermac.org
Nadia M DavidsonWalter and Eliza Hall InstituteVerified email at unimelb.edu.au
Luke ZappiaHelmholtz Zentrum München/Technische Universität MünchenVerified email at helmholtz-muenchen.de
Matthew D YoungWellcome Sanger InstituteVerified email at sanger.ac.uk
Matthew WakefieldWalter & Eliza Hall Institute; Dept of Obstetrics and Gynaecology, Univ of MelbourneVerified email at wehi.edu.au
Mark D. RobinsonFull Professor of Statistical Genomics, University of ZurichVerified email at mls.uzh.ch
Kynan LawlorMurdoch Childrens Research InstituteVerified email at mcri.edu.au
Yoav GiladUniversity of ChicagoVerified email at uchicago.edu
Alexander N CombesMonash Biomedicine Discovery Institute, Department of Anatomy and Developmental Biology, MonashVerified email at monash.edu
Andrew LonsdaleThe University of MelbourneVerified email at student.unimelb.edu.au
Blewitt ME, Blewitt M, Champ MELaboratory head, Walter and Eliza Hall InstituteVerified email at wehi.edu.au
Lavinia GordonUniversity of MelbourneVerified email at unimelb.edu.au
Matthew WhitingCSIRO Space & AstronomyVerified email at csiro.au
Lauren BrownResearch Officer, Children's Cancer InstituteVerified email at ccia.org.au
Matthew E RitchieThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
richard safferyVerified email at mcri.edu.au
Rachel WebsterUniversity of MelbourneVerified email at unimelb.edu.au
Craig SmithAssociate Professor of Biology, Monash UniversityVerified email at monash.edu

Alicia Oshlack

Peter MacCallum Cancer Centre

Verified email at petermac.org - Homepage

Bioinformatics RNA-seq scRNA-seq Cancer clinical genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
A scaling normalization method for differential expression analysis of RNA-seq data MD Robinson, A Oshlack Genome biology 11, 1-9, 2010	8040	2010
Gene ontology analysis for RNA-seq: accounting for selection bias MD Young, MJ Wakefield, GK Smyth, A Oshlack Genome biology 11, 1-12, 2010	6311	2010
A comparison of background correction methods for two-colour microarrays ME Ritchie, J Silver, A Oshlack, M Holmes, D Diyagama, A Holloway, ... Bioinformatics 23 (20), 2700-2707, 2007	1140	2007
From RNA-seq reads to differential expression results A Oshlack, MD Robinson, MD Young Genome biology 11, 1-10, 2010	971	2010
SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips J Maksimovic, L Gordon, A Oshlack Genome biology 13, 1-12, 2012	895	2012
Splatter: simulation of single-cell RNA sequencing data L Zappia, B Phipson, A Oshlack Genome biology 18 (1), 174, 2017	783	2017
missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform B Phipson, J Maksimovic, A Oshlack Bioinformatics 32 (2), 286-288, 2015	683	2015
Transcript length bias in RNA-seq data confounds systems biology A Oshlack, MJ Wakefield Biology direct 4, 1-10, 2009	676	2009
Corset: enabling differential gene expression analysis for de novoassembled transcriptomes NM Davidson, A Oshlack Genome biology 15, 1-14, 2014	630	2014
Clustering trees: a visualization for evaluating clusterings at multiple resolutions L Zappia, A Oshlack Gigascience 7 (7), giy083, 2018	598	2018
A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders Z Stark, TY Tan, B Chong, GR Brett, P Yap, M Walsh, A Yeung, H Peters, ... Genetics in medicine 18 (11), 1090-1096, 2016	408	2016
Expression profiling in primates reveals a rapid evolution of human transcription factors Y Gilad, A Oshlack, GK Smyth, TP Speed, KP White Nature 440 (7081), 242-245, 2006	396	2006
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity MD Young, TA Willson, MJ Wakefield, E Trounson, DJ Hilton, ME Blewitt, ... Nucleic acids research 39 (17), 7415-7427, 2011	347	2011
Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort S Eggers, S Sadedin, JA Van Den Bergen, G Robevska, T Ohnesorg, ... Genome biology 17, 1-21, 2016	335	2016
Diagnostic impact and cost-effectiveness of whole-exome sequencing for ambulant children with suspected monogenic conditions TY Tan, OJ Dillon, Z Stark, D Schofield, K Alam, R Shrestha, B Chong, ... JAMA pediatrics 171 (9), 855-862, 2017	319	2017
Array-based gene discovery with three unrelated subjects shows SCARB2/LIMP-2 deficiency causes myoclonus epilepsy and glomerulosclerosis SF Berkovic, LM Dibbens, A Oshlack, JD Silver, M Katerelos, DF Vears, ... The American Journal of Human Genetics 82 (3), 673-684, 2008	310	2008
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database L Zappia, B Phipson, A Oshlack PLoS computational biology 14 (6), e1006245, 2018	293	2018
Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips W Shi, A Oshlack, GK Smyth Nucleic acids research 38 (22), e204-e204, 2010	266	2010
Natural selection on gene expression Y Gilad, A Oshlack, SA Rifkin TRENDS in Genetics 22 (8), 456-461, 2006	256	2006
Evaluation of variability in human kidney organoids B Phipson, PX Er, AN Combes, TA Forbes, SE Howden, L Zappia, HJ Yen, ... Nature methods 16 (1), 79-87, 2019	218	2019

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