Timothy E Reddy
Timothy E Reddy
Associate Professor, Duke University
Verified email at - Homepage
Cited by
Cited by
An integrated encyclopedia of DNA elements in the human genome.
BE Bernstein, E Birney, I Dunham, ED Green, C Gunter, M Snyder
Nature 489 (7414), 57, 2012
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium Overall coordination (data analysis coordination ...
Nature 489 (7414), 57-74, 2012
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers
IB Hilton, AM D'ippolito, CM Vockley, PI Thakore, GE Crawford, TE Reddy, ...
Nature biotechnology 33 (5), 510-517, 2015
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
RNA-guided gene activation by CRISPR-Cas9–based transcription factors
P Perez-Pinera, DD Kocak, CM Vockley, AF Adler, AM Kabadi, ...
Nature methods 10 (10), 973-976, 2013
A user’s guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements
PI Thakore, AM D'ippolito, L Song, A Safi, NK Shivakumar, AM Kabadi, ...
Nature methods 12 (12), 1143-1149, 2015
Dynamic DNA methylation across diverse human cell lines and tissues
KE Varley, J Gertz, KM Bowling, SL Parker, TE Reddy, F Pauli-Behn, ...
Genome research 23 (3), 555-567, 2013
Comprehensive functional genomic resource and integrative model for the human brain
D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ...
Science 362 (6420), eaat8464, 2018
Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
TE Reddy, F Pauli, RO Sprouse, NF Neff, KM Newberry, MJ Garabedian, ...
Genome research 19 (12), 2163-2171, 2009
Multiplex CRISPR/Cas9-based genome editing for correction of dystrophin mutations that cause Duchenne muscular dystrophy
DG Ousterout, AM Kabadi, PI Thakore, WH Majoros, TE Reddy, ...
Nature communications 6 (1), 6244, 2015
CRISPR–Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome
TS Klann, JB Black, M Chellappan, A Safi, L Song, IB Hilton, GE Crawford, ...
Nature biotechnology 35 (6), 561-568, 2017
Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver
AL Brunner, DS Johnson, SW Kim, A Valouev, TE Reddy, NF Neff, ...
Genome research 19 (6), 1044-1056, 2009
Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation
J Gertz, KE Varley, TE Reddy, KM Bowling, F Pauli, SL Parker, KS Kucera, ...
PLoS genetics 7 (8), e1002228, 2011
Distinct properties of cell-type-specific and shared transcription factor binding sites
J Gertz, D Savic, KE Varley, EC Partridge, A Safi, P Jain, GM Cooper, ...
Molecular cell 52 (1), 25-36, 2013
The psychencode project
S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ...
Nature neuroscience 18 (12), 1707-1712, 2015
Targeted epigenetic remodeling of endogenous loci by CRISPR/Cas9-based transcriptional activators directly converts fibroblasts to neuronal cells
JB Black, AF Adler, HG Wang, AM D’Ippolito, HA Hutchinson, TE Reddy, ...
Cell stem cell 19 (3), 406-414, 2016
Effects of sequence variation on differential allelic transcription factor occupancy and gene expression
TE Reddy, J Gertz, F Pauli, KS Kucera, KE Varley, KM Newberry, ...
Genome research 22 (5), 860-869, 2012
New insights into gestational glucose metabolism: lessons learned from 21st century approaches
AR Angueira, AE Ludvik, TE Reddy, B Wicksteed, WL Lowe Jr, BT Layden
Diabetes 64 (2), 327-334, 2015
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