Marc T. Facciotti
Marc T. Facciotti
Professor of Biomedical Engineering, University of California, Davis
Verified email at - Homepage
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The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ...
Genome biology 7, 1-16, 2006
An integrated pipeline for de novo assembly of microbial genomes
A Tritt, JA Eisen, MT Facciotti, AE Darling
Public Library of Science 7 (9), e42304, 2012
Evaluation of algorithm performance in ChIP-seq peak detection
EG Wilbanks, MT Facciotti
PloS one 5 (7), e11471, 2010
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ...
Genome research 14 (11), 2221-2234, 2004
A predictive model for transcriptional control of physiology in a free living cell
R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ...
Cell 131 (7), 1354-1365, 2007
Prevalence of transcription promoters within archaeal operons and coding sequences
T Koide, DJ Reiss, JC Bare, WL Pang, MT Facciotti, AK Schmid, M Pan, ...
Molecular systems biology 5 (1), 285, 2009
Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-response
EA Becker, PM Seitzer, A Tritt, D Larsen, M Krusor, AI Yao, D Wu, ...
PLoS Genetics 10 (11), e1004784, 2014
General transcription factor specified global gene regulation in archaea
MT Facciotti, DJ Reiss, M Pan, A Kaur, M Vuthoori, R Bonneau, ...
Proceedings of the National Academy of Sciences 104 (11), 4630-4635, 2007
Crystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate
S Rouhani, JP Cartailler, MT Facciotti, P Walian, R Needleman, JK Lanyi, ...
Journal of molecular biology 313 (3), 615-628, 2001
Structure of an early intermediate in the M-state phase of the bacteriorhodopsin photocycle
MT Facciotti, S Rouhani, FT Burkard, FM Betancourt, KH Downing, ...
Biophysical Journal 81 (6), 3442-3455, 2001
A systems view of haloarchaeal strategies to withstand stress from transition metals
A Kaur, M Pan, M Meislin, MT Facciotti, R El-Gewely, NS Baliga
Genome research 16 (7), 841-854, 2006
Mauve assembly metrics
AE Darling, A Tritt, JA Eisen, MT Facciotti
Bioinformatics 27 (19), 2756-2757, 2011
IRF-1 and miRNA126 modulate VCAM-1 expression in response to a high-fat meal
C Sun, K Alkhoury, YI Wang, GA Foster, CE Radecke, K Tam, ...
Circulation research 111 (8), 1054-1064, 2012
Improved stearate phenotype in transgenic canola expressing a modified acyl-acyl carrier protein thioesterase
MT Facciotti, PB Bertain, L Yuan
Nature biotechnology 17 (6), 593-597, 1999
Ultrafast protein dynamics of bacteriorhodopsin probed by photon echo and transient absorption spectroscopy
JTM Kennis, DS Larsen, K Ohta, MT Facciotti, RM Glaeser, GR Fleming
The Journal of Physical Chemistry B 106 (23), 6067-6080, 2002
Microscale sulfur cycling in the phototrophic pink berry consortia of the S ippewissett S alt M arsh
EG Wilbanks, U Jaekel, V Salman, PT Humphrey, JA Eisen, MT Facciotti, ...
Environmental microbiology 16 (11), 3398-3415, 2014
Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its …
T Persson, K Battenberg, IV Demina, T Vigil-Stenman, B Vanden Heuvel, ...
PLoS One 10 (5), e0127630, 2015
Model-based deconvolution of genome-wide DNA binding
DJ Reiss, MT Facciotti, NS Baliga
Bioinformatics 24 (3), 396-403, 2008
A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq
EG Wilbanks, DJ Larsen, RY Neches, AI Yao, CY Wu, RAS Kjolby, ...
Nucleic acids research 40 (10), e74-e74, 2012
The effects of practice-based training on graduate teaching assistants’ classroom practices
EA Becker, EJ Easlon, SC Potter, A Guzman-Alvarez, JM Spear, ...
CBE—Life Sciences Education 16 (4), ar58, 2017
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