Per Larsson
Per Larsson
Assistant Professor, Uppsala University
Verified email at farmaci.uu.se
Title
Cited by
Cited by
Year
GROMACS 4.5: A high-throughput and highly parallel open source molecular simulation toolkit
S Pronk, S Páll, R Schulz, P Larsson, P Bjelkmar, R Apostolov, MR Shirts, ...
Bioinformatics, 2013
44792013
Implementation of the CHARMM force field in GROMACS: analysis of protein stability effects from correction maps, virtual interaction sites, and water models
P Bjelkmar, P Larsson, MA Cuendet, B Hess, E Lindahl
Journal of chemical theory and computation 6 (2), 459-466, 2010
5432010
Thermodynamics of hydrogen bonding in hydrophilic and hydrophobic media
D Van Der Spoel, PJ Van Maaren, P Larsson, N Tîmneanu
The Journal of Physical Chemistry B 110 (9), 4393-4398, 2006
2832006
the GROMACS development team
MJ Abraham, D Van Der Spoel, E Lindahl, B Hess
GROMACS user manual version 5 (2), 1-298, 2014
197*2014
Using multiple templates to improve quality of homology models in automated homology modeling
P Larsson, B Wallner, E Lindahl, A Elofsson
Protein Science 17 (6), 990-1002, 2008
1422008
Assessment of global and local model quality in CASP8 using Pcons and ProQ
P Larsson, MJ Skwark, B Wallner, A Elofsson
Proteins: Structure, Function, and Bioinformatics 77 (S9), 167-172, 2009
692009
Pcons. net: protein structure prediction meta server
B Wallner, P Larsson, A Elofsson
Nucleic acids research 35 (suppl_2), W369-W374, 2007
692007
Copernicus: A new paradigm for parallel adaptive molecular dynamics
S Pronk, GR Bowman, B Hess, P Larsson, IS Haque, VS Pande, I Pouya, ...
High Performance Computing, Networking, Storage and Analysis (SC), 2011 …, 2011
642011
Lipid Tail Protrusion in Simulations Predicts Fusogenic Activity of Influenza Fusion Peptide Mutants and Conformational Models
P Larsson, PM Kasson
PLOS Computational Biology 9 (3), e1002950, 2013
522013
Structure of the Neisserial Outer Membrane Protein Opa60: Loop Flexibility Essential to Receptor Recognition and Bacterial Engulfment
DA Fox, P Larsson, RH Lo, BM Kroncke, PM Kasson, L Columbus
Journal of the American Chemical Society 136 (28), 9938-9946, 2014
392014
Ebolavirus entry requires a compact hydrophobic fist at the tip of the fusion loop
SM Gregory, P Larsson, EA Nelson, PM Kasson, JM White, LK Tamm
Journal of virology 88 (12), 6636-6649, 2014
362014
Algorithm improvements for molecular dynamics simulations
P Larsson, B Hess, E Lindahl
Wiley interdisciplinary reviews: computational molecular science 1 (1), 93-108, 2011
362011
Mechanism-based selection of stabilization strategy for amorphous formulations: Insights into crystallization pathways
K Edueng, D Mahlin, P Larsson, CAS Bergström
Journal of Controlled Release 256, 193-202, 2017
332017
GROMACS user manual version 4.5. 4
E Apol, R Apostolov, HJC Berendsen, A Van Buuren, P Bjelkmar, ...
Royal Institute of Technology and Uppsala University, Stockholm, 2010
252010
A high‐performance parallel‐generalized born implementation enabled by tabulated interaction rescaling
P Larsson, E Lindahl
Journal of Computational Chemistry 31 (14), 2593-2600, 2010
222010
Computational prediction of drug solubility in water-based systems: qualitative and quantitative approaches used in the current drug discovery and development setting
CAS Bergström, P Larsson
International journal of pharmaceutics 540 (1-2), 185-193, 2018
182018
Improved predictions by Pcons. net using multiple templates
P Larsson, MJ Skwark, B Wallner, A Elofsson
Bioinformatics 27 (3), 426-427, 2011
182011
Partitioning into colloidal structures of fasted state intestinal fluid studied by molecular dynamics simulations
M Holmboe, P Larsson, J Anwar, CAS Bergström
Langmuir 32 (48), 12732-12740, 2016
62016
Lipid converter, a framework for lipid manipulations in molecular dynamics simulations
P Larsson, PM Kasson
The Journal of membrane biology 247 (11), 1137-1140, 2014
62014
Molecular structuring and phase transition of lipid-based formulations upon water dispersion: a coarse-grained molecular dynamics simulation approach
P Larsson, LC Alskär, CAS Bergström
Molecular pharmaceutics 14 (12), 4145-4153, 2017
52017
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Articles 1–20