|An atlas of active enhancers across human cell types and tissues|
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
|A promoter-level mammalian expression atlas|
ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ...
Nature 507 (7493), 462-470, 2014
|Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality|
E Ntini, AI Järvelin, J Bornholdt, Y Chen, M Boyd, M Jørgensen, ...
Nature structural & molecular biology 20 (8), 923, 2013
|Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes|
E Valen, P Preker, PR Andersen, X Zhao, Y Chen, C Ender, A Dueck, ...
Nature structural & molecular biology 18 (9), 1075, 2011
|Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes|
S Lykke-Andersen, Y Chen, BR Ardal, B Lilje, J Waage, A Sandelin, ...
Genes & development 28 (22), 2498-2517, 2014
|Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites|
SF Schmidt, M Jørgensen, Y Chen, R Nielsen, A Sandelin, S Mandrup
BMC genomics 12 (1), 152, 2011
|Identification of a nuclear exosome decay pathway for processed transcripts|
N Meola, M Domanski, E Karadoulama, Y Chen, C Gentil, D Pultz, ...
Molecular Cell 64 (3), 520-533, 2016
|Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters|
Y Chen, AA Pai, J Herudek, M Lubas, N Meola, AI Järvelin, R Andersson, ...
Nature genetics 48 (9), 984, 2016
|Human gene promoters are intrinsically bidirectional|
R Andersson, Y Chen, L Core, JT Lis, A Sandelin, TH Jensen
Molecular cell 60 (3), 346-347, 2015
|Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data|
Y Chen, M Jørgensen, R Kolde, X Zhao, B Parker, E Valen, J Wen, ...
BMC genomics 12 (1), 544, 2011
|Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies|
M Boyd, M Thodberg, M Vitezic, J Bornholdt, K Vitting-Seerup, Y Chen, ...
Nature communications 9 (1), 1-19, 2018
|Comprehensive profiling of the fission yeast transcription start site activity during stress and media response|
M Thodberg, A Thieffry, J Bornholdt, M Boyd, C Holmberg, A Azad, ...
Nucleic acids research 47 (4), 1671-1691, 2019
|The RNA exosome contributes to gene expression regulation during stem cell differentiation|
M Lloret-Llinares, E Karadoulama, Y Chen, LA Wojenski, GJ Villafano, ...
Nucleic acids research 46 (21), 11502-11513, 2018
|On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase|
H Ienasescu, K Li, R Andersson, M Vitezic, S Rennie, Y Chen, ...
Database 2016, 2016
|Dietary Control of Skin Lipid Composition and Microbiome.|
KS Moestrup, Y Chen, T Schepeler, PJ Schweiger, KB Jensen
The Journal of investigative dermatology 138 (5), 1225, 2018
|Relation between NOD2 genotype and changes in innate signaling in Crohn’s disease on mRNA and miRNA levels|
Y Chen, M Salem, M Boyd, J Bornholdt, Y Li, M Coskun, JB Seidelin, ...
NPJ genomic medicine 2 (1), 1-11, 2017
|Identification of promoters and enhancers induced by carbon nanotube exposure|
J Bornholdt, B Lilje, AT Saber, M Boyd, M Jørgensen, Y Chen, M Vitezic, ...
First Annual Danish Bioinformatics Conference, 2015