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Joseph Fass
Joseph Fass
UC Davis Genome Center
Verificeret mail på ucdavis.edu
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Citeret af
Citeret af
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
Gigascience 2 (1), 2047-217X-2-10, 2013
7982013
Sickle: a sliding-window, adaptive, quality-based trimming tool for FastQ files
NA Joshi, JN Fass
6492011
Sickle: A sliding-window, adaptive, quality-based trimming tool for FastQ files (Version 1.33)[Software]
NA Joshi, JN Fass
6382011
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
6332011
Sickle: a sliding-window, adaptive, quality-based trimming tool for FastQ files (version 1.33)
NA Joshi, JN Fass
4882011
Discovery of rare mutations in populations: TILLING by sequencing
H Tsai, T Howell, R Nitcher, V Missirian, B Watson, KJ Ngo, M Lieberman, ...
Plant physiology 156 (3), 1257-1268, 2011
3302011
Transcriptome profiling of citrus fruit response to huanglongbing disease
F Martinelli, SL Uratsu, U Albrecht, RL Reagan, ML Phu, M Britton, ...
PloS one 7 (5), e38039, 2012
2062012
Tensile force-dependent neurite elicitation via anti-β1 integrin antibody-coated magnetic beads
JN Fass, DJ Odde
Biophysical journal 85 (1), 623-636, 2003
1372003
High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.)
PJ Martínez-García, DE Parfitt, EA Ogundiwin, J Fass, HM Chan, ...
Tree Genetics & Genomes 9, 19-36, 2013
1252013
Mitochondrial DNA variant discovery and evaluation in human Cardiomyopathies through next-generation sequencing
MV Zaragoza, J Fass, M Diegoli, D Lin, E Arbustini
PloS one 5 (8), e12295, 2010
1172010
Sickle: a sliding-window, adaptive, quality-based trimming tool for FastQ files. 2011
NA Joshi, JN Fass
URL https://github. com/najoshi/sickle, 2018
1042018
Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection
R Ahmad, DE Parfitt, J Fass, E Ogundiwin, A Dhingra, TM Gradziel, D Lin, ...
BMC genomics 12, 1-7, 2011
1032011
Sickle: a sliding-window, adaptive, quality-based trimming tool for FastQ files (version 1.33). 2011
NA Joshi, JN Fass
URL https://githubcom/najoshi/sickle, 2016
862016
Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila
JN Fass, NA Joshi, MT Couvillion, J Bowen, MA Gorovsky, EP Hamilton, ...
G3: Genes| Genomes| Genetics 1 (6), 515-522, 2011
782011
Sickle-A windowed adaptive trimming tool for FASTQ files using quality
N Joshi, J Fass
Version 1.33, 2011
732011
Exploring the Transcriptome Landscape of Pomegranate Fruit Peel for Natural Product Biosynthetic Gene and SSR Marker DiscoveryF
NN Ono, MT Britton, JN Fass, CM Nicolet, D Lin, L Tian
Journal of integrative plant biology 53 (10), 800-813, 2011
712011
Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing
J Monson-Miller, DC Sanchez-Mendez, J Fass, IM Henry, TH Tai, L Comai
BMC genomics 13, 1-15, 2012
652012
Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms
FM You, KR Deal, J Wang, MT Britton, JN Fass, D Lin, AM Dandekar, ...
BMC genomics 13, 1-16, 2012
552012
A label-free differential quantitative mass spectrometry method for the characterization and identification of protein changes during citrus fruit development
E Katz, M Fon, RA Eigenheer, BS Phinney, JN Fass, D Lin, A Sadka, ...
Proteome Science 8, 1-19, 2010
552010
RNA-seq analyses of changes in the Anopheles gambiae transcriptome associated with resistance to pyrethroids in Kenya: identification of candidate-resistance …
M Bonizzoni, E Ochomo, WA Dunn, M Britton, Y Afrane, G Zhou, J Hartsel, ...
Parasites & vectors 8, 1-13, 2015
532015
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Artikler 1–20