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Brian Y Chen
Brian Y Chen
Associate Professor of Computer Science and Engineering, Lehigh University
Bekræftet mail på cse.lehigh.edu - Startside
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Sampling-based roadmap of trees for parallel motion planning
E Plaku, KE Bekris, BY Chen, AM Ladd, LE Kavraki
IEEE Transactions on Robotics 21 (4), 597-608, 2005
2082005
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids
DM Kristensen, RM Ward, AM Lisewski, S Erdin, BY Chen, VY Fofanov, ...
BMC bioinformatics 9 (1), 1-19, 2008
902008
Multiple query probabilistic roadmap planning using single query planning primitives
KE Bekris, BY Chen, AM Ladd, E Plaku, LE Kavraki
Proceedings 2003 IEEE/RSJ International Conference on Intelligent Robots and …, 2003
872003
Probabilistic roadmaps of trees for parallel computation of multiple query roadmaps
M Akinc, KE Bekris, BY Chen, AM Ladd, E Plaku, LE Kavraki
Robotics Research. The Eleventh International Symposium: With 303 Figures, 80-89, 2005
762005
VASP: a volumetric analysis of surface properties yields insights into protein-ligand binding specificity
BY Chen, B Honig
PLoS computational biology 6 (8), e1000881, 2010
682010
The MASH pipeline for protein function prediction and an algorithm for the geometric refinement of 3D motifs
BY Chen, VY Fofanov, DH Bryant, BD Dodson, DM Kristensen, ...
Journal of Computational Biology 14 (6), 791-816, 2007
502007
Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs
LE Chen, BY, Fofanov, VY, Kristensen, DM Kimmel, M. Lichtarge, O. and Kavraki
Pacific Symposium on Biocomputing 10, 334-345, 2005
47*2005
Mapping of ligand‐binding cavities in proteins
CD Andersson, BY Chen, A Linusson
Proteins: Structure, Function, and Bioinformatics 78 (6), 1408-1422, 2010
422010
Recurrent use of evolutionary importance for functional annotation of proteins based on local structural similarity
DM Kristensen, BY Chen, VY Fofanov, RM Ward, AM Lisewski, M Kimmel, ...
Protein Science 15 (6), 1530-1536, 2006
372006
Vasp-e: Specificity annotation with a volumetric analysis of electrostatic isopotentials
BY Chen
PLoS computational biology 10 (8), e1003792, 2014
282014
Cavity-aware motifs reduce false positives in protein function prediction
BY Chen, DH Bryant, VY Fofanov, DM Kristensen, AE Cruess, M Kimmel, ...
Computational Systems Bioinformatics, 311-323, 2006
262006
Ricin uses arginine 235 as an anchor residue to bind to P-proteins of the ribosomal stalk
Y Zhou, XP Li, BY Chen, NE Tumer
Scientific reports 7 (1), 1-12, 2017
222017
VASP-S: A volumetric analysis and statistical model for predicting steric influences on protein-ligand binding specificity
BY Chen, S Bandyopadhyay
2011 IEEE International Conference on Bioinformatics and Biomedicine, 22-29, 2011
222011
Geometric sieving: Automated distributed optimization of 3D motifs for protein function prediction
BY Chen, VY Fofanov, DH Bryant, BD Dodson, DM Kristensen, ...
Research in Computational Molecular Biology: 10th Annual International …, 2006
222006
Everything at once-multi-modal fusion transformer for video retrieval
N Shvetsova, B Chen, A Rouditchenko, S Thomas, B Kingsbury, RS Feris, ...
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …, 2022
212022
MarkUs: a server to navigate sequence–structure–function space
M Fischer, QC Zhang, F Dey, BY Chen, B Honig, D Petrey
Nucleic acids research 39 (suppl_2), W357-W361, 2011
202011
Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction
DH Bryant, M Moll, BY Chen, VY Fofanov, LE Kavraki
BMC bioinformatics 11 (1), 1-20, 2010
192010
Cavity scaling: automated refinement of cavity-aware motifs in protein function prediction
BY Chen, DH Bryant, VY Fofanov, DM Kristensen, AE Cruess, M Kimmel, ...
Journal of bioinformatics and computational biology 5 (02a), 353-382, 2007
182007
A statistical model of overlapping volume in ligand binding cavities
BY Chen, S Bandyopadhyay
2011 IEEE International Conference on Bioinformatics and Biomedicine …, 2011
142011
A statistical model to correct systematic bias introduced by algorithmic thresholds in protein structural comparison algorithms
VY Fofanov, BY Chen, DH Bryant, M Moll, O Lichtarge, L Kavraki, ...
2008 IEEE International Conference on Bioinformatics and Biomeidcine …, 2008
122008
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Artikler 1–20