| SyMAP v3. 4: a turnkey synteny system with application to plant genomes C Soderlund, M Bomhoff, WM Nelson Nucleic acids research 39 (10), e68-e68, 2011 | 311 | 2011 |
| In-band control of indicators to identify devices distributed on the same domain G Lucas, R Kubo, M Curnalia, A Cox, M Bomhoff US Patent App. 10/991,204, 2006 | 224 | 2006 |
| Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs C Soderlund, A Descour, D Kudrna, M Bomhoff, L Boyd, J Currie, ... PLoS genetics 5 (11), e1000740, 2009 | 184 | 2009 |
| SynFind: compiling syntenic regions across any set of genomes on demand H Tang, MD Bomhoff, E Briones, L Zhang, JC Schnable, E Lyons Genome biology and evolution 7 (12), 3286-3298, 2015 | 67 | 2015 |
| Cooling system control with clustered management services GS Lucas, RA Kubo, BJ Cagno, MD Bomhoff US Patent 7,287,708, 2007 | 59 | 2007 |
| Genome-wide patterns of differentiation among house mouse subspecies M Phifer-Rixey, M Bomhoff, MW Nachman Genetics 198 (1), 283-297, 2014 | 44 | 2014 |
| Libra: scalable k-mer–based tool for massive all-vs-all metagenome comparisons I Choi, AJ Ponsero, M Bomhoff, K Youens-Clark, JH Hartman, BL Hurwitz GigaScience 8 (2), giy165, 2019 | 33 | 2019 |
| PAVE: program for assembling and viewing ESTs C Soderlund, E Johnson, M Bomhoff, A Descour Bmc Genomics 10, 1-10, 2009 | 30 | 2009 |
| CoGe LoadExp+: A web‐based suite that integrates next‐generation sequencing data analysis workflows and visualization JW Grover, M Bomhoff, S Davey, BD Gregory, RA Mosher, E Lyons Plant Direct 1 (2), 2017 | 19 | 2017 |
| Multiple master inter integrated circuit bus system MD Bomhoff, BJ Cagno, RA Kubo, GS Lucas US Patent 7,281,070, 2007 | 19 | 2007 |
| Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data AJ Ponsero, M Bomhoff, K Blumberg, K Youens-Clark, NM Herz, ... Nucleic acids research 49 (D1), D792-D802, 2021 | 18 | 2021 |
| FractBias: a graphical tool for assessing fractionation bias following polyploidy BL Joyce, A Haug-Baltzell, S Davey, M Bomhoff, JC Schnable, E Lyons Bioinformatics 33 (4), 552-554, 2017 | 15 | 2017 |
| Flash mirroring M Bomhoff, B Cagno, G Lucas, K Qiu, A Seidel US Patent App. 10/965,378, 2006 | 13 | 2006 |
| Apparatus, system, and method for identifying network mis-cabling MD Bomhoff, BJ Cagno, GS Lucas, KNG Qiu, AE Seidel US Patent 7,619,981, 2009 | 9 | 2009 |
| Designing and evaluating scientific workflows for big data interactions R Etemadpour, M Bomhoff, E Lyons, P Murray, A Forbes 2015 Big Data Visual Analytics (BDVA), 1-8, 2015 | 8 | 2015 |
| Apparatus and method to set the signaling rate of a switch domain disposed within an information storage and retrieval system MD Bomhoff, BJ Cagno, JC Elliott, CE Jones, RA Kubo, GS Lucas US Patent 7,535,832, 2009 | 7 | 2009 |
| Apparatus, system, and method for integrating an enclosure MD Bomhoff, BJ Cagno, JC Elliott, RA Kubo, GS Lucas US Patent 7,519,693, 2009 | 6 | 2009 |
| Apparatus, system, and method for fibre channel device addressing M Bomhoff, B Cagno, J Elliott, R Kubo, G Lucas US Patent App. 11/061,955, 2006 | 6 | 2006 |
| fRNAkenseq: a fully powered-by-CyVerse cloud integrated RNA-sequencing analysis tool A Hubbard, M Bomhoff, CJ Schmidt PeerJ 8, e8592, 2020 | 4 | 2020 |
| Ontology-enriched specifications enabling findable, accessible, interoperable, and reusable marine metagenomic datasets in cyberinfrastructure systems KL Blumberg, AJ Ponsero, M Bomhoff, EM Wood-Charlson, EF DeLong, ... Frontiers in Microbiology 12, 765268, 2021 | 3 | 2021 |
