Sergey Aganezov
Sergey Aganezov
Genomic Applications at Oxford Nanopore Technologies, Inc
Verified email at
Cited by
Cited by
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes
DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ...
Science 347 (6217), 1258522, 2015
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
Major impacts of widespread structural variation on gene expression and crop improvement in tomato
M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ...
Cell 182 (1), 145-161. e23, 2020
Reconstruction of ancestral genomes in presence of gene gain and loss
P Avdeyev, S Jiang, S Aganezov, F Hu, MA Alekseyev
Journal of Computational Biology 23 (3), 150-164, 2016
Complete genomic and epigenetic maps of human centromeres
N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ...
Science 376 (6588), eabl4178, 2022
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell Genomics 2 (5), 100128, 2022
Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
S Aganezov, S Goodwin, RM Sherman, FJ Sedlazeck, G Arun, S Bhatia, ...
Genome research 30 (9), 1258-1273, 2020
A complete reference genome improves analysis of human genetic variation
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
Science 376 (6588), eabl3533, 2022
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 1-9, 2020
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
RM Waterhouse, S Aganezov, Y Anselmetti, J Lee, L Ruzzante, ...
BMC Biology 18 (1), 1, 2020
Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing
M Alonge, L Lebeigle, M Kirsche, S Aganezov, X Wang, ZB Lippman, ...
BioRxiv, 2021
Scaffold assembly based on genome rearrangement analysis
S Aganezov, N Sitdykova, MA Alekseyev, AGC Consortium
Computational Biology and Chemistry 57, 46-53, 2015
Jasmine: Population-scale structural variant comparison and analysis
M Kirsche, G Prabhu, R Sherman, B Ni, S Aganezov, MC Schatz
BioRxiv, 2021
Multi-genome scaffold co-assembly based on the analysis of gene orders and genomic repeats
S Aganezov, MA Alekseyev
International Symposium on Bioinformatics Research and Applications, 237-249, 2016
Reconstruction of clone-and haplotype-specific cancer genome karyotypes from bulk tumor samples
S Aganezov, BJ Raphael
Genome research 30 (9), 1274-1290, 2020
CAMSA: a tool for comparative analysis and merging of scaffold assemblies
SS Aganezov, MA Alekseyev
BMC bioinformatics 18 (15), 41-50, 2017
On pairwise distances and median score of three genomes under DCJ
S Aganezov, MA Alekseyev
BMC bioinformatics 13 (19), 1-7, 2012
Optimized sample selection for cost-efficient long-read population sequencing
TR Ranallo-Benavidez, Z Lemmon, S Soyk, S Aganezov, WJ Salerno, ...
Genome Research 31 (5), 910-918, 2021
The human origin recognition complex is essential for pre-RC assembly, mitosis, and maintenance of nuclear structure
HC Chou, K Bhalla, OEL Demerdesh, O Klingbeil, K Hanington, ...
Elife 10, e61797, 2021
A complete human reference genome improves variant calling for population and clinical genomics
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
bioRxiv (to appear), 2021
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