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Páll Melsted
Páll Melsted
Professor of Computer Science, University of Iceland
Verified email at hi.is - Homepage
Title
Cited by
Cited by
Year
Near-optimal probabilistic RNA-seq quantification
NL Bray, H Pimentel, P Melsted, L Pachter
Nature biotechnology 34 (5), 525-527, 2016
58932016
Mash: fast genome and metagenome distance estimation using MinHash
BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ...
Genome biology 17 (1), 1-14, 2016
17342016
Spread of SARS-CoV-2 in the Icelandic population
DF Gudbjartsson, A Helgason, H Jonsson, OT Magnusson, P Melsted, ...
New England Journal of Medicine 382 (24), 2302-2315, 2020
14862020
Differential analysis of RNA-seq incorporating quantification uncertainty
H Pimentel, NL Bray, S Puente, P Melsted, L Pachter
Nature methods 14 (7), 687-690, 2017
11432017
Humoral immune response to SARS-CoV-2 in Iceland
DF Gudbjartsson, GL Norddahl, P Melsted, K Gunnarsdottir, H Holm, ...
New England Journal of Medicine 383 (18), 1724-1734, 2020
9602020
Mapping the human genetic architecture of COVID-19
Writing group Writing group leaders Pathak Gita A. 6 Andrews Shea J. 7 Kanai ...
Nature 600 (7889), 472-477, 2021
4452021
Efficient counting of k-mers in DNA sequences using a bloom filter
P Melsted, JK Pritchard
BMC bioinformatics 12 (1), 1-7, 2011
3182011
Near-optimal RNA-Seq quantification
N Bray, H Pimentel, P Melsted, L Pachter
arXiv preprint arXiv:1505.02710, 2015
2292015
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
P Melsted*, AS Booeshaghi*, L Liu, F Gao, L Lu, KHJ Min, ...
Nature biotechnology, 1-6, *co-first author, 2021
204*2021
Graphtyper enables population-scale genotyping using pangenome graphs
HP Eggertsson, H Jonsson, S Kristmundsdottir, E Hjartarson, B Kehr, ...
Nature genetics 49 (11), 1654-1660, 2017
1622017
Comparative RNA sequencing reveals substantial genetic variation in endangered primates
GH Perry, P Melsted, JC Marioni, Y Wang, R Bainer, JK Pickrell, ...
Genome research 22 (4), 602-610, 2012
1532012
Erratum: Near-optimal probabilistic RNA-seq quantification
NL Bray, H Pimentel, P Melsted, L Pachter
Nature Biotechnology 34 (8), 888-888, 2016
1422016
Genomic‐scale capture and sequencing of endogenous DNA from feces
GH Perry, JC Marioni, P Melsted, Y Gilad
Molecular ecology 19 (24), 5332-5344, 2010
1362010
The barcode, UMI, set format and BUStools
P Melsted, V Ntranos, L Pachter
Bioinformatics 35 (21), 4472-4473, 2019
902019
A discriminative learning approach to differential expression analysis for single-cell RNA-seq
V Ntranos, L Yi, P Melsted, L Pachter
Nature methods 16 (2), 163-166, 2019
872019
GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs
HP Eggertsson, S Kristmundsdottir, D Beyter, H Jonsson, A Skuladottir, ...
Nature communications 10 (1), 5402, 2019
862019
Large-scale integration of the plasma proteome with genetics and disease
E Ferkingstad, P Sulem, BA Atlason, G Sveinbjornsson, MI Magnusson, ...
Nature genetics 53 (12), 1712-1721, 2021
812021
Pseudoalignment for metagenomic read assignment
L Schaeffer, H Pimentel, N Bray, P Melsted, L Pachter
Bioinformatics 33 (14), 2082-2088, 2017
792017
Bifrost: highly parallel construction and indexing of colored and compacted de Bruijn graphs
G Holley, P Melsted
Genome biology 21 (1), 1-20, 2020
762020
KmerStream: streaming algorithms for k -mer abundance estimation
P Melsted, BV Halldórsson
Bioinformatics 30 (24), 3541-3547, 2014
722014
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