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Shaimaa  Bakr
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A radiogenomic dataset of non-small cell lung cancer
S Bakr, O Gevaert, S Echegaray, K Ayers, M Zhou, M Shafiq, H Zheng, ...
Scientific data 5 (1), 1-9, 2018
2272018
GFPT2-Expressing Cancer-Associated Fibroblasts Mediate Metabolic Reprogramming in Human Lung Adenocarcinoma
W Zhang, G Bouchard, A Yu, M Shafiq, M Jamali, JB Shrager, K Ayers, ...
Cancer research 78 (13), 3445-3457, 2018
892018
Noninvasive radiomics signature based on quantitative analysis of computed tomography images as a surrogate for microvascular invasion in hepatocellular carcinoma: a pilot study
S Bakr, S Echegaray, R Shah, A Kamaya, J Louie, S Napel, N Kothary, ...
Journal of Medical Imaging 4 (4), 041303-041303, 2017
812017
Data for NSCLC radiogenomics collection
S Bakr, O Gevaert, S Echegaray, K Ayers, M Zhou, M Shafiq, H Zheng, ...
The Cancer Imaging Archive 10, K9, 2017
732017
Quantitative Image Feature Engine (QIFE): an open-source, modular engine for 3D quantitative feature extraction from volumetric medical images
S Echegaray, S Bakr, DL Rubin, S Napel
Journal of digital imaging 31, 403-414, 2018
552018
[18F] FDG positron emission tomography (PET) tumor and penumbra imaging features predict recurrence in non–small cell lung cancer
SA Mattonen, GA Davidzon, S Bakr, S Echegaray, ANC Leung, ...
Tomography 5 (1), 145-153, 2019
292019
Quantitative imaging feature pipeline: a web-based tool for utilizing, sharing, and building image-processing pipelines
SA Mattonen, D Gude, S Echegaray, S Bakr, DL Rubin, S Napel
Journal of Medical Imaging 7 (4), 042803-042803, 2020
242020
Interreader variability in semantic annotation of microvascular invasion in hepatocellular carcinoma on contrast-enhanced triphasic CT images
S Bakr, O Gevaert, B Patel, A Kesselman, R Shah, S Napel, N Kothary
Radiology: Imaging Cancer 2 (3), e190062, 2020
122020
Imaging-AMARETTO: an imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes
O Gevaert, M Nabian, S Bakr, C Everaert, J Shinde, A Manukyan, ...
JCO clinical cancer informatics 4, 421-435, 2020
82020
Data for NSCLC Radiogenomics Collection. The Cancer Imaging Archive. 2017
S Bakr, O Gevaert, S Echegaray, K Ayers, M Zhou, M Shafiq, H Zheng, ...
7
A radiogenomic dataset of non-small cell lung cancer. Sci Data 5: 180202
S Bakr, O Gevaert, S Echegaray, K Ayers, M Zhou, M Shafiq, H Zheng, ...
62018
Data for NSCLC Radiogenomics collection. The Cancer Imaging Archive
S Bakr, O Gevaert, S Echegaray, K Ayers, M Zhou, M Shafiq, H Zheng, ...
62017
A radiogenomic dataset of non-small cell lung cancer. Sci Data. 2018; 5: 180202
S Bakr, O Gevaert, S Echegaray, K Ayers, M Zhou, M Shafiq, H Zheng, ...
52018
Identifying key multifunctional components shared by critical cancer and normal liver pathways via SparseGMM
S Bakr, K Brennan, P Mukherjee, J Argemi, M Hernaez, O Gevaert
Cell Reports Methods 3 (1), 2023
12023
Characterization and Linking of Imaging and Molecular Patterns in Hepatocellular Carcinoma
SHA Bakr
Stanford University, 2021
2021
Genomics and Interventional Oncology in Primary Liver Cancer
R Slovak, MD Case, HS Kim
Digestive Disease Interventions 4 (01), 053-059, 2020
2020
Introduction to AMARETTO
J Shinde, C Everaert, S Bakr, M Nabian, J Xu, V Carey, N Pochet, ...
2019
Positron Emission Tomography (PET) Tumor Penumbra Imaging Features Predict Outcome in Non-Small Cell Lung Cancer
S Mattonen, GA Davidzon, S Bakr, M Vasanawala, GS Horng, S Napel, ...
D99. CLINICALLY INFORMATIVE BIOMARKERS IN LUNG CANCER: A NEEDLE IN A …, 2018
2018
Imaging-AMARETTO: a software tool for imaging genomics in cancer
O Gevaert, M Nabian, S Bakr, C Everaert, J Shinde, A Manukyan, ...
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Artikler 1–19