Hanfei Sun
Hanfei Sun
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Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
S Mei, Q Qin, Q Wu, H Sun, R Zheng, C Zang, M Zhu, J Wu, X Shi, L Taing, ...
Nucleic acids research, gkw983, 2016
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis
R Zheng, C Wan, S Mei, Q Qin, Q Wu, H Sun, CH Chen, M Brown, ...
Nucleic acids research 47 (D1), D729-D735, 2019
Target analysis by integration of transcriptome and ChIP-seq data with BETA
S Wang, H Sun, J Ma, C Zang, C Wang, J Wang, Q Tang, CA Meyer, ...
Nature protocols 8 (12), 2502-2515, 2013
JARID1B is a luminal lineage-driving oncogene in breast cancer
S Yamamoto, Z Wu, HG Russnes, S Takagi, G Peluffo, C Vaske, X Zhao, ...
Cancer cell 25 (6), 762-777, 2014
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
MI Cornwell, M Vangala, L Taing, Z Herbert, J Köster, B Li, H Sun, T Li, ...
BMC bioinformatics 19 (1), 1-14, 2018
Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data
Q Qin, J Fan, R Zheng, C Wan, S Mei, Q Wu, H Sun, M Brown, J Zhang, ...
Genome biology 21 (1), 1-14, 2020
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
Q Qin, S Mei, Q Wu, H Sun, L Li, L Taing, S Chen, F Li, T Liu, C Zang, ...
BMC bioinformatics 17 (1), 1-13, 2016
BSeQC: quality control of bisulfite sequencing experiments
X Lin, D Sun, B Rodriguez, Q Zhao, H Sun, Y Zhang, W Li
Bioinformatics 29 (24), 3227-3229, 2013
CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse
Q Wang, J Huang, H Sun, J Liu, J Wang, Q Wang, Q Qin, S Mei, C Zhao, ...
Nucleic acids research 42 (D1), D450-D458, 2014
RubyStar: A Non-Task-Oriented Mixture Model Dialog System
H Liu, T Lin, H Sun, W Lin, CW Chang, T Zhong, A Rudnicky
CistromeFinder for ChIP-seq and DNase-seq data reuse
H Sun, B Qin, T Liu, Q Wang, J Liu, J Wang, X Lin, Y Yang, L Taing, ...
Bioinformatics 29 (10), 1352-1354, 2013
Unsupervised Typography Transfer
H Sun, Y Luo, Z Lu
arXiv preprint arXiv:1802.02595, 2018
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M Cornwell, M Vangala, L Taing, Z Herbert, J Koster, B Li, H Sun, T Li, ...
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